RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

135 rows where domain_label = "Eukarya" and rna_group = "23S" sorted by organism

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Suggested facets: diagram_code, molecule_code, folder_mismatch

rna_group 1

  • 23S · 135 ✖

domain_label 1

  • Eukarya · 135 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
b.233.e.A.albopictus 23S b 233 e Eukarya   A.albopictus 23S/e/A.albopictus no   https://staging.crw2.org/data/23S/e/A.albopictus/b.233.e.A.albopictus.bpseq.txt https://staging.crw2.org/data/23S/e/A.albopictus/b.233.e.A.albopictus.ss.txt
b.235.e.A.albopictus 23S b 235 e Eukarya   A.albopictus 23S/e/A.albopictus no https://staging.crw2.org/data/23S/e/A.albopictus/b.235.e.A.albopictus.pdf https://staging.crw2.org/data/23S/e/A.albopictus/b.235.e.A.albopictus.bpseq.txt https://staging.crw2.org/data/23S/e/A.albopictus/b.235.e.A.albopictus.ss.txt
d.23.e.A.thaliana 23S d 23 e Eukarya   A.thaliana 23S/e/A.thaliana no   https://staging.crw2.org/data/23S/e/A.thaliana/d.23.e.A.thaliana.bpseq.txt  
d.233.e.A.thaliana 23S d 233 e Eukarya   A.thaliana 23S/e/A.thaliana no https://staging.crw2.org/data/23S/e/A.thaliana/d.233.e.A.thaliana.pdf https://staging.crw2.org/data/23S/e/A.thaliana/d.233.e.A.thaliana.bpseq.txt https://staging.crw2.org/data/23S/e/A.thaliana/d.233.e.A.thaliana.ss.txt
d.235.e.A.thaliana 23S d 235 e Eukarya   A.thaliana 23S/e/A.thaliana no https://staging.crw2.org/data/23S/e/A.thaliana/d.235.e.A.thaliana.pdf https://staging.crw2.org/data/23S/e/A.thaliana/d.235.e.A.thaliana.bpseq.txt https://staging.crw2.org/data/23S/e/A.thaliana/d.235.e.A.thaliana.ss.txt
b.233.e.B.bigemina 23S b 233 e Eukarya   B.bigemina 23S/e/B.bigemina no   https://staging.crw2.org/data/23S/e/B.bigemina/b.233.e.B.bigemina.bpseq.txt https://staging.crw2.org/data/23S/e/B.bigemina/b.233.e.B.bigemina.ss.txt
b.235.e.B.bigemina 23S b 235 e Eukarya   B.bigemina 23S/e/B.bigemina no   https://staging.crw2.org/data/23S/e/B.bigemina/b.235.e.B.bigemina.bpseq.txt https://staging.crw2.org/data/23S/e/B.bigemina/b.235.e.B.bigemina.ss.txt
b.233.e.B.napus 23S b 233 e Eukarya   B.napus 23S/e/B.napus no https://staging.crw2.org/data/23S/e/B.napus/b.233.e.B.napus.pdf https://staging.crw2.org/data/23S/e/B.napus/b.233.e.B.napus.bpseq.txt https://staging.crw2.org/data/23S/e/B.napus/b.233.e.B.napus.ss.txt
b.235.e.B.napus 23S b 235 e Eukarya   B.napus 23S/e/B.napus no   https://staging.crw2.org/data/23S/e/B.napus/b.235.e.B.napus.bpseq.txt https://staging.crw2.org/data/23S/e/B.napus/b.235.e.B.napus.ss.txt
b.233.e.C.albicans 23S b 233 e Eukarya   C.albicans 23S/e/C.albicans no https://staging.crw2.org/data/23S/e/C.albicans/b.233.e.C.albicans.pdf https://staging.crw2.org/data/23S/e/C.albicans/b.233.e.C.albicans.bpseq.txt https://staging.crw2.org/data/23S/e/C.albicans/b.233.e.C.albicans.ss.txt
b.235.e.C.albicans 23S b 235 e Eukarya   C.albicans 23S/e/C.albicans no   https://staging.crw2.org/data/23S/e/C.albicans/b.235.e.C.albicans.bpseq.txt https://staging.crw2.org/data/23S/e/C.albicans/b.235.e.C.albicans.ss.txt
b.233.e.C.elegans 23S b 233 e Eukarya   C.elegans 23S/e/C.elegans no   https://staging.crw2.org/data/23S/e/C.elegans/b.233.e.C.elegans.bpseq.txt https://staging.crw2.org/data/23S/e/C.elegans/b.233.e.C.elegans.ss.txt
b.235.e.C.elegans 23S b 235 e Eukarya   C.elegans 23S/e/C.elegans no   https://staging.crw2.org/data/23S/e/C.elegans/b.235.e.C.elegans.bpseq.txt https://staging.crw2.org/data/23S/e/C.elegans/b.235.e.C.elegans.ss.txt
d.23.e.C.elegans 23S d 23 e Eukarya   C.elegans 23S/e/C.elegans no   https://staging.crw2.org/data/23S/e/C.elegans/d.23.e.C.elegans.bpseq.txt  
d.233.e.C.elegans 23S d 233 e Eukarya   C.elegans 23S/e/C.elegans no   https://staging.crw2.org/data/23S/e/C.elegans/d.233.e.C.elegans.bpseq.txt https://staging.crw2.org/data/23S/e/C.elegans/d.233.e.C.elegans.ss.txt
d.235.e.C.elegans 23S d 235 e Eukarya   C.elegans 23S/e/C.elegans no   https://staging.crw2.org/data/23S/e/C.elegans/d.235.e.C.elegans.bpseq.txt https://staging.crw2.org/data/23S/e/C.elegans/d.235.e.C.elegans.ss.txt
b.233.e.C.ellipsoidea 23S b 233 e Eukarya   C.ellipsoidea 23S/e/C.ellipsoidea no   https://staging.crw2.org/data/23S/e/C.ellipsoidea/b.233.e.C.ellipsoidea.bpseq.txt https://staging.crw2.org/data/23S/e/C.ellipsoidea/b.233.e.C.ellipsoidea.ss.txt
b.235.e.C.ellipsoidea 23S b 235 e Eukarya   C.ellipsoidea 23S/e/C.ellipsoidea no https://staging.crw2.org/data/23S/e/C.ellipsoidea/b.235.e.C.ellipsoidea.pdf https://staging.crw2.org/data/23S/e/C.ellipsoidea/b.235.e.C.ellipsoidea.bpseq.txt https://staging.crw2.org/data/23S/e/C.ellipsoidea/b.235.e.C.ellipsoidea.ss.txt
b.233.e.C.fasciculata 23S b 233 e Eukarya   C.fasciculata 23S/e/C.fasciculata no https://staging.crw2.org/data/23S/e/C.fasciculata/b.233.e.C.fasciculata.pdf https://staging.crw2.org/data/23S/e/C.fasciculata/b.233.e.C.fasciculata.bpseq.txt https://staging.crw2.org/data/23S/e/C.fasciculata/b.233.e.C.fasciculata.ss.txt
b.235.e.C.fasciculata 23S b 235 e Eukarya   C.fasciculata 23S/e/C.fasciculata no   https://staging.crw2.org/data/23S/e/C.fasciculata/b.235.e.C.fasciculata.bpseq.txt https://staging.crw2.org/data/23S/e/C.fasciculata/b.235.e.C.fasciculata.ss.txt
b.233.e.D.discoideum 23S b 233 e Eukarya   D.discoideum 23S/e/D.discoideum no https://staging.crw2.org/data/23S/e/D.discoideum/b.233.e.D.discoideum.pdf https://staging.crw2.org/data/23S/e/D.discoideum/b.233.e.D.discoideum.bpseq.txt https://staging.crw2.org/data/23S/e/D.discoideum/b.233.e.D.discoideum.ss.txt
b.235.e.D.discoideum 23S b 235 e Eukarya   D.discoideum 23S/e/D.discoideum no   https://staging.crw2.org/data/23S/e/D.discoideum/b.235.e.D.discoideum.bpseq.txt https://staging.crw2.org/data/23S/e/D.discoideum/b.235.e.D.discoideum.ss.txt
b.233.e.D.iridis 23S b 233 e Eukarya   D.iridis 23S/e/D.iridis no https://staging.crw2.org/data/23S/e/D.iridis/b.233.e.D.iridis.pdf https://staging.crw2.org/data/23S/e/D.iridis/b.233.e.D.iridis.bpseq.txt https://staging.crw2.org/data/23S/e/D.iridis/b.233.e.D.iridis.ss.txt
b.235.e.D.iridis 23S b 235 e Eukarya   D.iridis 23S/e/D.iridis no   https://staging.crw2.org/data/23S/e/D.iridis/b.235.e.D.iridis.bpseq.txt https://staging.crw2.org/data/23S/e/D.iridis/b.235.e.D.iridis.ss.txt
b.233.e.D.melanogaster 23S b 233 e Eukarya   D.melanogaster 23S/e/D.melanogaster no https://staging.crw2.org/data/23S/e/D.melanogaster/b.233.e.D.melanogaster.pdf https://staging.crw2.org/data/23S/e/D.melanogaster/b.233.e.D.melanogaster.bpseq.txt https://staging.crw2.org/data/23S/e/D.melanogaster/b.233.e.D.melanogaster.ss.txt
b.235.e.D.melanogaster 23S b 235 e Eukarya   D.melanogaster 23S/e/D.melanogaster no https://staging.crw2.org/data/23S/e/D.melanogaster/b.235.e.D.melanogaster.pdf https://staging.crw2.org/data/23S/e/D.melanogaster/b.235.e.D.melanogaster.bpseq.txt https://staging.crw2.org/data/23S/e/D.melanogaster/b.235.e.D.melanogaster.ss.txt
d.235.e.D.melanogaster 23S d 235 e Eukarya   D.melanogaster 23S/e/D.melanogaster no https://staging.crw2.org/data/23S/e/D.melanogaster/d.235.e.D.melanogaster.pdf https://staging.crw2.org/data/23S/e/D.melanogaster/d.235.e.D.melanogaster.bpseq.txt https://staging.crw2.org/data/23S/e/D.melanogaster/d.235.e.D.melanogaster.ss.txt
d.23.e.E.cuniculi 23S d 23 e Eukarya   E.cuniculi 23S/e/E.cuniculi no   https://staging.crw2.org/data/23S/e/E.cuniculi/d.23.e.E.cuniculi.bpseq.txt  
d.233.e.E.cuniculi 23S d 233 e Eukarya   E.cuniculi 23S/e/E.cuniculi no https://staging.crw2.org/data/23S/e/E.cuniculi/d.233.e.E.cuniculi.pdf https://staging.crw2.org/data/23S/e/E.cuniculi/d.233.e.E.cuniculi.bpseq.txt https://staging.crw2.org/data/23S/e/E.cuniculi/d.233.e.E.cuniculi.ss.txt
d.235.e.E.cuniculi 23S d 235 e Eukarya   E.cuniculi 23S/e/E.cuniculi no https://staging.crw2.org/data/23S/e/E.cuniculi/d.235.e.E.cuniculi.pdf https://staging.crw2.org/data/23S/e/E.cuniculi/d.235.e.E.cuniculi.bpseq.txt https://staging.crw2.org/data/23S/e/E.cuniculi/d.235.e.E.cuniculi.ss.txt
b.233.e.E.gracilis 23S b 233 e Eukarya   E.gracilis 23S/e/E.gracilis no https://staging.crw2.org/data/23S/e/E.gracilis/b.233.e.E.gracilis.pdf https://staging.crw2.org/data/23S/e/E.gracilis/b.233.e.E.gracilis.bpseq.txt https://staging.crw2.org/data/23S/e/E.gracilis/b.233.e.E.gracilis.ss.txt
b.235.e.E.gracilis 23S b 235 e Eukarya   E.gracilis 23S/e/E.gracilis no   https://staging.crw2.org/data/23S/e/E.gracilis/b.235.e.E.gracilis.bpseq.txt https://staging.crw2.org/data/23S/e/E.gracilis/b.235.e.E.gracilis.ss.txt
b.233.e.E.histolytica 23S b 233 e Eukarya   E.histolytica 23S/e/E.histolytica no https://staging.crw2.org/data/23S/e/E.histolytica/b.233.e.E.histolytica.pdf https://staging.crw2.org/data/23S/e/E.histolytica/b.233.e.E.histolytica.bpseq.txt https://staging.crw2.org/data/23S/e/E.histolytica/b.233.e.E.histolytica.ss.txt
b.235.e.E.histolytica 23S b 235 e Eukarya   E.histolytica 23S/e/E.histolytica no   https://staging.crw2.org/data/23S/e/E.histolytica/b.235.e.E.histolytica.bpseq.txt https://staging.crw2.org/data/23S/e/E.histolytica/b.235.e.E.histolytica.ss.txt
b.233.e.F.neoformans 23S b 233 e Eukarya   F.neoformans 23S/e/F.neoformans no https://staging.crw2.org/data/23S/e/F.neoformans/b.233.e.F.neoformans.pdf https://staging.crw2.org/data/23S/e/F.neoformans/b.233.e.F.neoformans.bpseq.txt https://staging.crw2.org/data/23S/e/F.neoformans/b.233.e.F.neoformans.ss.txt
b.235.e.F.neoformans 23S b 235 e Eukarya   F.neoformans 23S/e/F.neoformans no https://staging.crw2.org/data/23S/e/F.neoformans/b.235.e.F.neoformans.pdf https://staging.crw2.org/data/23S/e/F.neoformans/b.235.e.F.neoformans.bpseq.txt https://staging.crw2.org/data/23S/e/F.neoformans/b.235.e.F.neoformans.ss.txt
b.233.e.Fra.x.ananassa 23S b 233 e Eukarya   Fra.x.ananassa 23S/e/Fra.x.ananassa no https://staging.crw2.org/data/23S/e/Fra.x.ananassa/b.233.e.Fra.x.ananassa.pdf https://staging.crw2.org/data/23S/e/Fra.x.ananassa/b.233.e.Fra.x.ananassa.bpseq.txt https://staging.crw2.org/data/23S/e/Fra.x.ananassa/b.233.e.Fra.x.ananassa.ss.txt
b.235.e.Fra.x.ananassa 23S b 235 e Eukarya   Fra.x.ananassa 23S/e/Fra.x.ananassa no https://staging.crw2.org/data/23S/e/Fra.x.ananassa/b.235.e.Fra.x.ananassa.pdf https://staging.crw2.org/data/23S/e/Fra.x.ananassa/b.235.e.Fra.x.ananassa.bpseq.txt https://staging.crw2.org/data/23S/e/Fra.x.ananassa/b.235.e.Fra.x.ananassa.ss.txt
b.233.e.G.ardeae 23S b 233 e Eukarya   G.ardeae 23S/e/G.ardeae no   https://staging.crw2.org/data/23S/e/G.ardeae/b.233.e.G.ardeae.bpseq.txt https://staging.crw2.org/data/23S/e/G.ardeae/b.233.e.G.ardeae.ss.txt
b.235.e.G.ardeae 23S b 235 e Eukarya   G.ardeae 23S/e/G.ardeae no https://staging.crw2.org/data/23S/e/G.ardeae/b.235.e.G.ardeae.pdf https://staging.crw2.org/data/23S/e/G.ardeae/b.235.e.G.ardeae.bpseq.txt https://staging.crw2.org/data/23S/e/G.ardeae/b.235.e.G.ardeae.ss.txt
d.23.e.G.intestinalis 23S d 23 e Eukarya   G.intestinalis 23S/e/G.intestinalis no   https://staging.crw2.org/data/23S/e/G.intestinalis/d.23.e.G.intestinalis.bpseq.txt  
d.233.e.G.intestinalis 23S d 233 e Eukarya   G.intestinalis 23S/e/G.intestinalis no https://staging.crw2.org/data/23S/e/G.intestinalis/d.233.e.G.intestinalis.pdf https://staging.crw2.org/data/23S/e/G.intestinalis/d.233.e.G.intestinalis.bpseq.txt https://staging.crw2.org/data/23S/e/G.intestinalis/d.233.e.G.intestinalis.ss.txt
d.235.e.G.intestinalis 23S d 235 e Eukarya   G.intestinalis 23S/e/G.intestinalis no https://staging.crw2.org/data/23S/e/G.intestinalis/d.235.e.G.intestinalis.pdf https://staging.crw2.org/data/23S/e/G.intestinalis/d.235.e.G.intestinalis.bpseq.txt https://staging.crw2.org/data/23S/e/G.intestinalis/d.235.e.G.intestinalis.ss.txt
b.233.e.G.muris 23S b 233 e Eukarya   G.muris 23S/e/G.muris no https://staging.crw2.org/data/23S/e/G.muris/b.233.e.G.muris.pdf https://staging.crw2.org/data/23S/e/G.muris/b.233.e.G.muris.bpseq.txt https://staging.crw2.org/data/23S/e/G.muris/b.233.e.G.muris.ss.txt
b.235.e.G.muris 23S b 235 e Eukarya   G.muris 23S/e/G.muris no   https://staging.crw2.org/data/23S/e/G.muris/b.235.e.G.muris.bpseq.txt https://staging.crw2.org/data/23S/e/G.muris/b.235.e.G.muris.ss.txt
b.233.e.H.inflata 23S b 233 e Eukarya   H.inflata 23S/e/H.inflata no   https://staging.crw2.org/data/23S/e/H.inflata/b.233.e.H.inflata.bpseq.txt https://staging.crw2.org/data/23S/e/H.inflata/b.233.e.H.inflata.ss.txt
b.235.e.H.inflata 23S b 235 e Eukarya   H.inflata 23S/e/H.inflata no   https://staging.crw2.org/data/23S/e/H.inflata/b.235.e.H.inflata.bpseq.txt https://staging.crw2.org/data/23S/e/H.inflata/b.235.e.H.inflata.ss.txt
b.233.e.H.momus 23S b 233 e Eukarya   H.momus 23S/e/H.momus no https://staging.crw2.org/data/23S/e/H.momus/b.233.e.H.momus.pdf https://staging.crw2.org/data/23S/e/H.momus/b.233.e.H.momus.bpseq.txt https://staging.crw2.org/data/23S/e/H.momus/b.233.e.H.momus.ss.txt
b.235.e.H.momus 23S b 235 e Eukarya   H.momus 23S/e/H.momus no   https://staging.crw2.org/data/23S/e/H.momus/b.235.e.H.momus.bpseq.txt https://staging.crw2.org/data/23S/e/H.momus/b.235.e.H.momus.ss.txt
b.23.e.H.sapiens 23S b 23 e Eukarya   H.sapiens 23S/e/H.sapiens no   https://staging.crw2.org/data/23S/e/H.sapiens/b.23.e.H.sapiens.bpseq.txt  

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);