RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

6 rows where domain_label = "Eukarya" and intron_subgroup = "E" sorted by organism

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: diagram_code

rna_group 1

intron_subgroup 1

domain_label 1

  • Eukarya · 6 ✖
structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
b.I1.e.C.hypophloia.E.SSU.989 GRPI b I1 e Eukarya E C.hypophloia.E.SSU.989 GRPI/E/e.C.hypophloia.E.SSU.989 no https://staging.crw2.org/data/GRPI/E/e.C.hypophloia.E.SSU.989/b.I1.e.C.hypophloia.E.SSU.989.pdf https://staging.crw2.org/data/GRPI/E/e.C.hypophloia.E.SSU.989/b.I1.e.C.hypophloia.E.SSU.989.bpseq.txt https://staging.crw2.org/data/GRPI/E/e.C.hypophloia.E.SSU.989/b.I1.e.C.hypophloia.E.SSU.989.ss.txt
a.I1.e.C.parasitica.E.SSU.1199 GRPI a I1 e Eukarya E C.parasitica.E.SSU.1199 GRPI/E/e.C.parasitica.E.SSU.1199 no https://staging.crw2.org/data/GRPI/E/e.C.parasitica.E.SSU.1199/a.I1.e.C.parasitica.E.SSU.1199.pdf https://staging.crw2.org/data/GRPI/E/e.C.parasitica.E.SSU.1199/a.I1.e.C.parasitica.E.SSU.1199.bpseq.txt https://staging.crw2.org/data/GRPI/E/e.C.parasitica.E.SSU.1199/a.I1.e.C.parasitica.E.SSU.1199.ss.txt
b.I1.e.E.nigra.2.E.SSU.989 GRPI b I1 e Eukarya E E.nigra.2.E.SSU.989 GRPI/E/e.E.nigra.2.E.SSU.989 no https://staging.crw2.org/data/GRPI/E/e.E.nigra.2.E.SSU.989/b.I1.e.E.nigra.2.E.SSU.989.pdf https://staging.crw2.org/data/GRPI/E/e.E.nigra.2.E.SSU.989/b.I1.e.E.nigra.2.E.SSU.989.bpseq.txt https://staging.crw2.org/data/GRPI/E/e.E.nigra.2.E.SSU.989/b.I1.e.E.nigra.2.E.SSU.989.ss.txt
b.I1.e.H.rubra.E.SSU.989 GRPI b I1 e Eukarya E H.rubra.E.SSU.989 GRPI/E/e.H.rubra.E.SSU.989 no https://staging.crw2.org/data/GRPI/E/e.H.rubra.E.SSU.989/b.I1.e.H.rubra.E.SSU.989.pdf https://staging.crw2.org/data/GRPI/E/e.H.rubra.E.SSU.989/b.I1.e.H.rubra.E.SSU.989.bpseq.txt https://staging.crw2.org/data/GRPI/E/e.H.rubra.E.SSU.989/b.I1.e.H.rubra.E.SSU.989.ss.txt
b.I1.e.M.anisopliae.2.E.LSU.2066 GRPI b I1 e Eukarya E M.anisopliae.2.E.LSU.2066 GRPI/E/e.M.anisopliae.2.E.LSU.2066 no https://staging.crw2.org/data/GRPI/E/e.M.anisopliae.2.E.LSU.2066/b.I1.e.M.anisopliae.2.E.LSU.2066.pdf https://staging.crw2.org/data/GRPI/E/e.M.anisopliae.2.E.LSU.2066/b.I1.e.M.anisopliae.2.E.LSU.2066.bpseq.txt https://staging.crw2.org/data/GRPI/E/e.M.anisopliae.2.E.LSU.2066/b.I1.e.M.anisopliae.2.E.LSU.2066.ss.txt
b.I1.e.M.anisopliae.4.E.LSU.2066 GRPI b I1 e Eukarya E M.anisopliae.4.E.LSU.2066 GRPI/E/e.M.anisopliae.4.E.LSU.2066 no https://staging.crw2.org/data/GRPI/E/e.M.anisopliae.4.E.LSU.2066/b.I1.e.M.anisopliae.4.E.LSU.2066.pdf https://staging.crw2.org/data/GRPI/E/e.M.anisopliae.4.E.LSU.2066/b.I1.e.M.anisopliae.4.E.LSU.2066.bpseq.txt https://staging.crw2.org/data/GRPI/E/e.M.anisopliae.4.E.LSU.2066/b.I1.e.M.anisopliae.4.E.LSU.2066.ss.txt

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);