RNA structures

One row per structure. Use the search box (organism or structure ID) and the filters at the top; the pdf / bpseq / ss columns link to the files.
structure_id
Unique ID taken from the file name.
rna_group
16S, 23S, 5S, GRPI (group I intron) or GRPII (group II intron).
domain_label
Archaea, Bacteria, Chloroplast, Eukarya, Mitochondria or Cyanelle.
intron_subgroup
Intron subgroup (GRPI A-E or UNK, GRPII A-B); blank for rRNAs.
folder_mismatch
yes = files for this structure exist in more than one folder; worth a manual check.
pdf_url
Structure diagram (PDF).
bpseq_url
Base-pair list (bpseq format).
ss_url
Secondary-structure file (ss format).

95 rows where domain_label = "Bacteria" and rna_group = "5S" sorted by organism

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rna_group 1

domain_label 1

  • Bacteria · 95 ✖

intron_subgroup 0

structure_id rna_group diagram_code molecule_code domain_code domain_label intron_subgroup organism ▼ source_folder folder_mismatch pdf_url bpseq_url ss_url
d.5.b.A.faecalis.1 5S d 5 b Bacteria   A.faecalis.1 5S/b/A.faecalis.1 no https://staging.crw2.org/data/5S/b/A.faecalis.1/d.5.b.A.faecalis.1.pdf https://staging.crw2.org/data/5S/b/A.faecalis.1/d.5.b.A.faecalis.1.bpseq.txt https://staging.crw2.org/data/5S/b/A.faecalis.1/d.5.b.A.faecalis.1.ss.txt
d.5.b.A.ferrooxidans.1 5S d 5 b Bacteria   A.ferrooxidans.1 5S/b/A.ferrooxidans.1 no https://staging.crw2.org/data/5S/b/A.ferrooxidans.1/d.5.b.A.ferrooxidans.1.pdf https://staging.crw2.org/data/5S/b/A.ferrooxidans.1/d.5.b.A.ferrooxidans.1.bpseq.txt https://staging.crw2.org/data/5S/b/A.ferrooxidans.1/d.5.b.A.ferrooxidans.1.ss.txt
d.5.b.A.ferrooxidans.2 5S d 5 b Bacteria   A.ferrooxidans.2 5S/b/A.ferrooxidans.2 no https://staging.crw2.org/data/5S/b/A.ferrooxidans.2/d.5.b.A.ferrooxidans.2.pdf https://staging.crw2.org/data/5S/b/A.ferrooxidans.2/d.5.b.A.ferrooxidans.2.bpseq.txt https://staging.crw2.org/data/5S/b/A.ferrooxidans.2/d.5.b.A.ferrooxidans.2.ss.txt
d.5.b.A.globiformis.1 5S d 5 b Bacteria   A.globiformis.1 5S/b/A.globiformis.1 no https://staging.crw2.org/data/5S/b/A.globiformis.1/d.5.b.A.globiformis.1.pdf https://staging.crw2.org/data/5S/b/A.globiformis.1/d.5.b.A.globiformis.1.bpseq.txt https://staging.crw2.org/data/5S/b/A.globiformis.1/d.5.b.A.globiformis.1.ss.txt
d.5.b.A.globiformis.2 5S d 5 b Bacteria   A.globiformis.2 5S/b/A.globiformis.2 no https://staging.crw2.org/data/5S/b/A.globiformis.2/d.5.b.A.globiformis.2.pdf https://staging.crw2.org/data/5S/b/A.globiformis.2/d.5.b.A.globiformis.2.bpseq.txt https://staging.crw2.org/data/5S/b/A.globiformis.2/d.5.b.A.globiformis.2.ss.txt
d.5.b.A.madurae 5S d 5 b Bacteria   A.madurae 5S/b/A.madurae no https://staging.crw2.org/data/5S/b/A.madurae/d.5.b.A.madurae.pdf https://staging.crw2.org/data/5S/b/A.madurae/d.5.b.A.madurae.bpseq.txt https://staging.crw2.org/data/5S/b/A.madurae/d.5.b.A.madurae.ss.txt
d.5.b.A.oxydans 5S d 5 b Bacteria   A.oxydans 5S/b/A.oxydans no https://staging.crw2.org/data/5S/b/A.oxydans/d.5.b.A.oxydans.pdf https://staging.crw2.org/data/5S/b/A.oxydans/d.5.b.A.oxydans.bpseq.txt https://staging.crw2.org/data/5S/b/A.oxydans/d.5.b.A.oxydans.ss.txt
d.5.b.A.thiooxidans 5S d 5 b Bacteria   A.thiooxidans 5S/b/A.thiooxidans no https://staging.crw2.org/data/5S/b/A.thiooxidans/d.5.b.A.thiooxidans.pdf https://staging.crw2.org/data/5S/b/A.thiooxidans/d.5.b.A.thiooxidans.bpseq.txt https://staging.crw2.org/data/5S/b/A.thiooxidans/d.5.b.A.thiooxidans.ss.txt
d.5.b.A.tumefaciens 5S d 5 b Bacteria   A.tumefaciens 5S/b/A.tumefaciens no https://staging.crw2.org/data/5S/b/A.tumefaciens/d.5.b.A.tumefaciens.pdf https://staging.crw2.org/data/5S/b/A.tumefaciens/d.5.b.A.tumefaciens.bpseq.txt https://staging.crw2.org/data/5S/b/A.tumefaciens/d.5.b.A.tumefaciens.ss.txt
d.5.b.A.vinelandii 5S d 5 b Bacteria   A.vinelandii 5S/b/A.vinelandii no https://staging.crw2.org/data/5S/b/A.vinelandii/d.5.b.A.vinelandii.pdf https://staging.crw2.org/data/5S/b/A.vinelandii/d.5.b.A.vinelandii.bpseq.txt https://staging.crw2.org/data/5S/b/A.vinelandii/d.5.b.A.vinelandii.ss.txt
d.5.b.B.alba 5S d 5 b Bacteria   B.alba 5S/b/B.alba no https://staging.crw2.org/data/5S/b/B.alba/d.5.b.B.alba.pdf https://staging.crw2.org/data/5S/b/B.alba/d.5.b.B.alba.bpseq.txt https://staging.crw2.org/data/5S/b/B.alba/d.5.b.B.alba.ss.txt
b.5.b.B.fragilis 5S b 5 b Bacteria   B.fragilis 5S/b/B.fragilis no https://staging.crw2.org/data/5S/b/B.fragilis/b.5.b.B.fragilis.pdf https://staging.crw2.org/data/5S/b/B.fragilis/b.5.b.B.fragilis.bpseq.txt https://staging.crw2.org/data/5S/b/B.fragilis/b.5.b.B.fragilis.ss.txt
d.5.b.B.subtilis 5S d 5 b Bacteria   B.subtilis 5S/b/B.subtilis no https://staging.crw2.org/data/5S/b/B.subtilis/d.5.b.B.subtilis.pdf https://staging.crw2.org/data/5S/b/B.subtilis/d.5.b.B.subtilis.bpseq.txt https://staging.crw2.org/data/5S/b/B.subtilis/d.5.b.B.subtilis.ss.txt
d.5.b.C.jejuni 5S d 5 b Bacteria   C.jejuni 5S/b/C.jejuni no https://staging.crw2.org/data/5S/b/C.jejuni/d.5.b.C.jejuni.pdf https://staging.crw2.org/data/5S/b/C.jejuni/d.5.b.C.jejuni.bpseq.txt https://staging.crw2.org/data/5S/b/C.jejuni/d.5.b.C.jejuni.ss.txt
d.5.b.C.limicola 5S d 5 b Bacteria   C.limicola 5S/b/C.limicola no https://staging.crw2.org/data/5S/b/C.limicola/d.5.b.C.limicola.pdf https://staging.crw2.org/data/5S/b/C.limicola/d.5.b.C.limicola.bpseq.txt https://staging.crw2.org/data/5S/b/C.limicola/d.5.b.C.limicola.ss.txt
d.5.b.D.acidovorans 5S d 5 b Bacteria   D.acidovorans 5S/b/D.acidovorans no https://staging.crw2.org/data/5S/b/D.acidovorans/d.5.b.D.acidovorans.pdf https://staging.crw2.org/data/5S/b/D.acidovorans/d.5.b.D.acidovorans.bpseq.txt https://staging.crw2.org/data/5S/b/D.acidovorans/d.5.b.D.acidovorans.ss.txt
d.5.b.D.radiodurans.rrnA 5S d 5 b Bacteria   D.radiodurans.rrnA 5S/b/D.radiodurans.rrnA no https://staging.crw2.org/data/5S/b/D.radiodurans.rrnA/d.5.b.D.radiodurans.rrnA.pdf https://staging.crw2.org/data/5S/b/D.radiodurans.rrnA/d.5.b.D.radiodurans.rrnA.bpseq.txt https://staging.crw2.org/data/5S/b/D.radiodurans.rrnA/d.5.b.D.radiodurans.rrnA.ss.txt
d.5.b.D.radiodurans.rrnB 5S d 5 b Bacteria   D.radiodurans.rrnB 5S/b/D.radiodurans.rrnB no https://staging.crw2.org/data/5S/b/D.radiodurans.rrnB/d.5.b.D.radiodurans.rrnB.pdf https://staging.crw2.org/data/5S/b/D.radiodurans.rrnB/d.5.b.D.radiodurans.rrnB.bpseq.txt https://staging.crw2.org/data/5S/b/D.radiodurans.rrnB/d.5.b.D.radiodurans.rrnB.ss.txt
d.5.b.D.radiodurans.rrnC 5S d 5 b Bacteria   D.radiodurans.rrnC 5S/b/D.radiodurans.rrnC no https://staging.crw2.org/data/5S/b/D.radiodurans.rrnC/d.5.b.D.radiodurans.rrnC.pdf https://staging.crw2.org/data/5S/b/D.radiodurans.rrnC/d.5.b.D.radiodurans.rrnC.bpseq.txt https://staging.crw2.org/data/5S/b/D.radiodurans.rrnC/d.5.b.D.radiodurans.rrnC.ss.txt
d.5.b.E.brevis 5S d 5 b Bacteria   E.brevis 5S/b/E.brevis no https://staging.crw2.org/data/5S/b/E.brevis/d.5.b.E.brevis.pdf https://staging.crw2.org/data/5S/b/E.brevis/d.5.b.E.brevis.bpseq.txt https://staging.crw2.org/data/5S/b/E.brevis/d.5.b.E.brevis.ss.txt
d.5.b.E.coli 5S d 5 b Bacteria   E.coli 5S/b/E.coli no https://staging.crw2.org/data/5S/b/E.coli/d.5.b.E.coli.pdf https://staging.crw2.org/data/5S/b/E.coli/d.5.b.E.coli.bpseq.txt https://staging.crw2.org/data/5S/b/E.coli/d.5.b.E.coli.ss.txt
d.5.b.E.coli.03 5S d 5 b Bacteria   E.coli.03 5S/b/E.coli.03 no https://staging.crw2.org/data/5S/b/E.coli.03/d.5.b.E.coli.03.pdf https://staging.crw2.org/data/5S/b/E.coli.03/d.5.b.E.coli.03.bpseq.txt https://staging.crw2.org/data/5S/b/E.coli.03/d.5.b.E.coli.03.ss.txt
d.5.b.E.shaposhnikovii 5S d 5 b Bacteria   E.shaposhnikovii 5S/b/E.shaposhnikovii no https://staging.crw2.org/data/5S/b/E.shaposhnikovii/d.5.b.E.shaposhnikovii.pdf https://staging.crw2.org/data/5S/b/E.shaposhnikovii/d.5.b.E.shaposhnikovii.bpseq.txt https://staging.crw2.org/data/5S/b/E.shaposhnikovii/d.5.b.E.shaposhnikovii.ss.txt
b.5.b.F.mortiferum 5S b 5 b Bacteria   F.mortiferum 5S/b/F.mortiferum no https://staging.crw2.org/data/5S/b/F.mortiferum/b.5.b.F.mortiferum.pdf https://staging.crw2.org/data/5S/b/F.mortiferum/b.5.b.F.mortiferum.bpseq.txt https://staging.crw2.org/data/5S/b/F.mortiferum/b.5.b.F.mortiferum.ss.txt
d.5.b.G.hollisae 5S d 5 b Bacteria   G.hollisae 5S/b/G.hollisae no https://staging.crw2.org/data/5S/b/G.hollisae/d.5.b.G.hollisae.pdf https://staging.crw2.org/data/5S/b/G.hollisae/d.5.b.G.hollisae.bpseq.txt https://staging.crw2.org/data/5S/b/G.hollisae/d.5.b.G.hollisae.ss.txt
d.5.b.G.stearothermophilus.1 5S d 5 b Bacteria   G.stearothermophilus.1 5S/b/G.stearothermophilus.1 no https://staging.crw2.org/data/5S/b/G.stearothermophilus.1/d.5.b.G.stearothermophilus.1.pdf https://staging.crw2.org/data/5S/b/G.stearothermophilus.1/d.5.b.G.stearothermophilus.1.bpseq.txt https://staging.crw2.org/data/5S/b/G.stearothermophilus.1/d.5.b.G.stearothermophilus.1.ss.txt
d.5.b.G.stearothermophilus.2 5S d 5 b Bacteria   G.stearothermophilus.2 5S/b/G.stearothermophilus.2 no https://staging.crw2.org/data/5S/b/G.stearothermophilus.2/d.5.b.G.stearothermophilus.2.pdf https://staging.crw2.org/data/5S/b/G.stearothermophilus.2/d.5.b.G.stearothermophilus.2.bpseq.txt https://staging.crw2.org/data/5S/b/G.stearothermophilus.2/d.5.b.G.stearothermophilus.2.ss.txt
d.5.b.G.stearothermophilus.3 5S d 5 b Bacteria   G.stearothermophilus.3 5S/b/G.stearothermophilus.3 no https://staging.crw2.org/data/5S/b/G.stearothermophilus.3/d.5.b.G.stearothermophilus.3.pdf https://staging.crw2.org/data/5S/b/G.stearothermophilus.3/d.5.b.G.stearothermophilus.3.bpseq.txt https://staging.crw2.org/data/5S/b/G.stearothermophilus.3/d.5.b.G.stearothermophilus.3.ss.txt
d.5.b.G.stearothermophilus.4 5S d 5 b Bacteria   G.stearothermophilus.4 5S/b/G.stearothermophilus.4 no https://staging.crw2.org/data/5S/b/G.stearothermophilus.4/d.5.b.G.stearothermophilus.4.pdf https://staging.crw2.org/data/5S/b/G.stearothermophilus.4/d.5.b.G.stearothermophilus.4.bpseq.txt https://staging.crw2.org/data/5S/b/G.stearothermophilus.4/d.5.b.G.stearothermophilus.4.ss.txt
d.5.b.H.halophila 5S d 5 b Bacteria   H.halophila 5S/b/H.halophila no https://staging.crw2.org/data/5S/b/H.halophila/d.5.b.H.halophila.pdf https://staging.crw2.org/data/5S/b/H.halophila/d.5.b.H.halophila.bpseq.txt https://staging.crw2.org/data/5S/b/H.halophila/d.5.b.H.halophila.ss.txt
d.5.b.H.influenzae 5S d 5 b Bacteria   H.influenzae 5S/b/H.influenzae no https://staging.crw2.org/data/5S/b/H.influenzae/d.5.b.H.influenzae.pdf https://staging.crw2.org/data/5S/b/H.influenzae/d.5.b.H.influenzae.bpseq.txt https://staging.crw2.org/data/5S/b/H.influenzae/d.5.b.H.influenzae.ss.txt
d.5.b.L.anguillarum 5S d 5 b Bacteria   L.anguillarum 5S/b/L.anguillarum no https://staging.crw2.org/data/5S/b/L.anguillarum/d.5.b.L.anguillarum.pdf https://staging.crw2.org/data/5S/b/L.anguillarum/d.5.b.L.anguillarum.bpseq.txt https://staging.crw2.org/data/5S/b/L.anguillarum/d.5.b.L.anguillarum.ss.txt
d.5.b.L.pelagia 5S d 5 b Bacteria   L.pelagia 5S/b/L.pelagia no https://staging.crw2.org/data/5S/b/L.pelagia/d.5.b.L.pelagia.pdf https://staging.crw2.org/data/5S/b/L.pelagia/d.5.b.L.pelagia.bpseq.txt https://staging.crw2.org/data/5S/b/L.pelagia/d.5.b.L.pelagia.ss.txt
b.5.b.M.bovis 5S b 5 b Bacteria   M.bovis 5S/b/M.bovis no https://staging.crw2.org/data/5S/b/M.bovis/b.5.b.M.bovis.pdf https://staging.crw2.org/data/5S/b/M.bovis/b.5.b.M.bovis.bpseq.txt https://staging.crw2.org/data/5S/b/M.bovis/b.5.b.M.bovis.ss.txt
d.5.b.M.capricolum 5S d 5 b Bacteria   M.capricolum 5S/b/M.capricolum no https://staging.crw2.org/data/5S/b/M.capricolum/d.5.b.M.capricolum.pdf https://staging.crw2.org/data/5S/b/M.capricolum/d.5.b.M.capricolum.bpseq.txt https://staging.crw2.org/data/5S/b/M.capricolum/d.5.b.M.capricolum.ss.txt
d.5.b.M.genitalium 5S d 5 b Bacteria   M.genitalium 5S/b/M.genitalium no https://staging.crw2.org/data/5S/b/M.genitalium/d.5.b.M.genitalium.pdf https://staging.crw2.org/data/5S/b/M.genitalium/d.5.b.M.genitalium.bpseq.txt https://staging.crw2.org/data/5S/b/M.genitalium/d.5.b.M.genitalium.ss.txt
b.5.b.M.hyopneumoniae 5S b 5 b Bacteria   M.hyopneumoniae 5S/b/M.hyopneumoniae no https://staging.crw2.org/data/5S/b/M.hyopneumoniae/b.5.b.M.hyopneumoniae.pdf https://staging.crw2.org/data/5S/b/M.hyopneumoniae/b.5.b.M.hyopneumoniae.bpseq.txt https://staging.crw2.org/data/5S/b/M.hyopneumoniae/b.5.b.M.hyopneumoniae.ss.txt
d.5.b.M.luteus 5S d 5 b Bacteria   M.luteus 5S/b/M.luteus no https://staging.crw2.org/data/5S/b/M.luteus/d.5.b.M.luteus.pdf https://staging.crw2.org/data/5S/b/M.luteus/d.5.b.M.luteus.bpseq.txt https://staging.crw2.org/data/5S/b/M.luteus/d.5.b.M.luteus.ss.txt
b.5.b.M.pneumoniae 5S b 5 b Bacteria   M.pneumoniae 5S/b/M.pneumoniae no https://staging.crw2.org/data/5S/b/M.pneumoniae/b.5.b.M.pneumoniae.pdf https://staging.crw2.org/data/5S/b/M.pneumoniae/b.5.b.M.pneumoniae.bpseq.txt https://staging.crw2.org/data/5S/b/M.pneumoniae/b.5.b.M.pneumoniae.ss.txt
d.5.b.P.aeruginosa.1 5S d 5 b Bacteria   P.aeruginosa.1 5S/b/P.aeruginosa.1 no https://staging.crw2.org/data/5S/b/P.aeruginosa.1/d.5.b.P.aeruginosa.1.pdf https://staging.crw2.org/data/5S/b/P.aeruginosa.1/d.5.b.P.aeruginosa.1.bpseq.txt https://staging.crw2.org/data/5S/b/P.aeruginosa.1/d.5.b.P.aeruginosa.1.ss.txt
d.5.b.P.aeruginosa.2 5S d 5 b Bacteria   P.aeruginosa.2 5S/b/P.aeruginosa.2 no https://staging.crw2.org/data/5S/b/P.aeruginosa.2/d.5.b.P.aeruginosa.2.pdf https://staging.crw2.org/data/5S/b/P.aeruginosa.2/d.5.b.P.aeruginosa.2.bpseq.txt https://staging.crw2.org/data/5S/b/P.aeruginosa.2/d.5.b.P.aeruginosa.2.ss.txt
d.5.b.P.angustum 5S d 5 b Bacteria   P.angustum 5S/b/P.angustum no https://staging.crw2.org/data/5S/b/P.angustum/d.5.b.P.angustum.pdf https://staging.crw2.org/data/5S/b/P.angustum/d.5.b.P.angustum.bpseq.txt https://staging.crw2.org/data/5S/b/P.angustum/d.5.b.P.angustum.ss.txt
d.5.b.P.brasiliensis 5S d 5 b Bacteria   P.brasiliensis 5S/b/P.brasiliensis no https://staging.crw2.org/data/5S/b/P.brasiliensis/d.5.b.P.brasiliensis.pdf https://staging.crw2.org/data/5S/b/P.brasiliensis/d.5.b.P.brasiliensis.bpseq.txt https://staging.crw2.org/data/5S/b/P.brasiliensis/d.5.b.P.brasiliensis.ss.txt
d.5.b.P.damselae 5S d 5 b Bacteria   P.damselae 5S/b/P.damselae.damsel no https://staging.crw2.org/data/5S/b/P.damselae.damsel/d.5.b.P.damselae.pdf https://staging.crw2.org/data/5S/b/P.damselae.damsel/d.5.b.P.damselae.bpseq.txt https://staging.crw2.org/data/5S/b/P.damselae.damsel/d.5.b.P.damselae.ss.txt
d.5.b.P.fluorescens 5S d 5 b Bacteria   P.fluorescens 5S/b/P.fluorescens no https://staging.crw2.org/data/5S/b/P.fluorescens/d.5.b.P.fluorescens.pdf https://staging.crw2.org/data/5S/b/P.fluorescens/d.5.b.P.fluorescens.bpseq.txt https://staging.crw2.org/data/5S/b/P.fluorescens/d.5.b.P.fluorescens.ss.txt
d.5.b.P.hydrocarbonoxydans 5S d 5 b Bacteria   P.hydrocarbonoxydans 5S/b/P.hydrocarbonoxydans no https://staging.crw2.org/data/5S/b/P.hydrocarbonoxydans/d.5.b.P.hydrocarbonoxydans.pdf https://staging.crw2.org/data/5S/b/P.hydrocarbonoxydans/d.5.b.P.hydrocarbonoxydans.bpseq.txt https://staging.crw2.org/data/5S/b/P.hydrocarbonoxydans/d.5.b.P.hydrocarbonoxydans.ss.txt
d.5.b.P.shigelloides 5S d 5 b Bacteria   P.shigelloides 5S/b/P.shigelloides no https://staging.crw2.org/data/5S/b/P.shigelloides/d.5.b.P.shigelloides.pdf https://staging.crw2.org/data/5S/b/P.shigelloides/d.5.b.P.shigelloides.bpseq.txt https://staging.crw2.org/data/5S/b/P.shigelloides/d.5.b.P.shigelloides.ss.txt
d.5.b.P.stutzeri 5S d 5 b Bacteria   P.stutzeri 5S/b/P.stutzeri.1 no https://staging.crw2.org/data/5S/b/P.stutzeri.1/d.5.b.P.stutzeri.pdf https://staging.crw2.org/data/5S/b/P.stutzeri.1/d.5.b.P.stutzeri.bpseq.txt https://staging.crw2.org/data/5S/b/P.stutzeri.1/d.5.b.P.stutzeri.ss.txt
d.5.b.P.stutzeri.2 5S d 5 b Bacteria   P.stutzeri.2 5S/b/P.stutzeri.2 no https://staging.crw2.org/data/5S/b/P.stutzeri.2/d.5.b.P.stutzeri.2.pdf https://staging.crw2.org/data/5S/b/P.stutzeri.2/d.5.b.P.stutzeri.2.bpseq.txt https://staging.crw2.org/data/5S/b/P.stutzeri.2/d.5.b.P.stutzeri.2.ss.txt
d.5.b.P.vulgaris 5S d 5 b Bacteria   P.vulgaris 5S/b/P.vulgaris no https://staging.crw2.org/data/5S/b/P.vulgaris/d.5.b.P.vulgaris.pdf https://staging.crw2.org/data/5S/b/P.vulgaris/d.5.b.P.vulgaris.bpseq.txt https://staging.crw2.org/data/5S/b/P.vulgaris/d.5.b.P.vulgaris.ss.txt

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CREATE TABLE "structures" (
   "structure_id" TEXT PRIMARY KEY,
   "rna_group" TEXT,
   "diagram_code" TEXT,
   "molecule_code" TEXT,
   "domain_code" TEXT,
   "domain_label" TEXT,
   "intron_subgroup" TEXT,
   "organism" TEXT,
   "source_folder" TEXT,
   "folder_mismatch" TEXT
, "pdf_url" TEXT, "bpseq_url" TEXT, "ss_url" TEXT);