crw2: basepair_frequency: 18 rows where strength = "Significant" and tertiary_type = "3°: base pair" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

18 rows where strength = "Significant" and tertiary_type = "3°: base pair" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	pair_note	header_format	reference_base_pair	conformation	ai_code	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UU	gap	Seq	predominant_types	covarying_types
3753	3753	23S	5	53	117		v4	A:G	tHS		3°: base pair	Significant	T		0.4	1.5	2.1			0.8	0.3	66.2					0.1	0.3	28.1	719	AU,AG	UA,AG
3754	3754	23S	5	53	117		v4	A:G	tHS		3°: base pair	Significant	3		0.5		1.5					97.5					0.2		0.2	405	AG
3755	3755	23S	5	53	117		v4	A:G	tHS		3°: base pair	Significant	B									100.0								252	AG
3756	3756	23S	5	53	117		v4	A:G	tHS		3°: base pair	Significant	A		5.6		11.1					83.3								36	CG,AU,AG
3757	3757	23S	5	53	117		v4	A:G	tHS		3°: base pair	Significant	C							6.2		93.8								81	AA,AG
3758	3758	23S	5	53	117		v4	A:G	tHS		3°: base pair	Significant	E				1.7					96.6					0.9		0.9	117	AG
3759	3759	23S	5	53	117		v4	A:G	tHS		3°: base pair	Significant	M		0.4	4.7	3.9			0.4	0.9	2.1						0.9	86.6	233	UA,AU,AG	CG,UA,AU
133	133	5S	3	78	98	Tertiary	legacy			B	3°: base pair	Significant	3			0.3	0.5			5.2	0.3	92.3	0.7			0.2	0.3		0.2	611	AA,AG	AG,CA
134	134	5S	3	78	98	Tertiary	legacy			B	3°: base pair	Significant	B			0.3	1.3			10.6	0.7	85.8				0.3	0.7		0.3	302	AA,AG	AG,GA
135	135	5S	3	78	98	Tertiary	legacy			B	3°: base pair	Significant	A			2.3				2.3		86.4	9.1							44	UA,AA,AG,CA	AG,CA
136	136	5S	3	78	98	Tertiary	legacy			B	3°: base pair	Significant	E									100.0								298	AG
6406	6406	23S	51	1348	1598		v4	C:A	cWW		3°: base pair	Significant	T	29.1		7.8	1.3	0.6	0.5	1.5	0.8	0.1	15.5	0.6	0.2	0.1		0.1	41.5	844	GC,UA,CA	GC,AU,UG,CA
6407	6407	23S	51	1348	1598		v4	C:A	cWW		3°: base pair	Significant	3	32.1		4.3	0.4	0.6	0.4	0.9			19.7						41.6	468	GC,UA,CA	GC,AU,UG,CA
6408	6408	23S	51	1348	1598		v4	C:A	cWW		3°: base pair	Significant	B	57.0		5.3	0.8	1.1	0.8				35.0							263	GC,UA,CA	GC,AU,UG,CA
6409	6409	23S	51	1348	1598		v4	C:A	cWW		3°: base pair	Significant	A																99.9	41
6410	6410	23S	51	1348	1598		v4	C:A	cWW		3°: base pair	Significant	C	96.0			2.0	2.0												100	GC,AU,GU	GC,AU
6411	6411	23S	51	1348	1598		v4	C:A	cWW		3°: base pair	Significant	E			3.7				2.4									93.9	164	UA,AA
6412	6412	23S	51	1348	1598		v4	C:A	cWW		3°: base pair	Significant	M			16.7	2.5		0.7	3.3	2.5	0.4	14.1	1.8	0.7	0.4		0.4	56.6	276	UA,AU,AA,AC,CA	UA,AC,CU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

18 rows where strength = "Significant" and tertiary_type = "3°: base pair" sorted by position_1

Advanced export