Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

14 rows where strength = "No Support" and tertiary_type = "3°: base pair" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, GC, AC, GG, gap, predominant_types, covarying_types

group_code 7

molecule 2

tertiary_type 1

  • 3°: base pair · 14 ✖

strength 1

  • No Support · 14 ✖

header_format 1

conformation 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
2668 2668 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support T 91.4     6.3 1.9                 0.1     0.2 6774 GC,AU GC,AU
2669 2669 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support 3 97.0     0.3 2.3           0.1     0.1     0.1 5466 GC,GU GC,AU
2670 2670 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support B 99.4       0.4                 0.1       4267 GC  
2671 2671 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support A 36.0     7.6 55.8                       0.5 197 GC,AU,GU  
2672 2672 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support C 100.0                                 162 GC  
2673 2673 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support E 99.3       0.2           0.2     0.1     0.2 998 GC  
2674 2674 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support M 63.7     35.5 0.3     0.2           0.1 0.1   0.2 1151 GC,AU GC,AU
9549 9549 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support T 20.7 2.6 2.6 20.2 17.8 2.8   0.2 5.2 0.5   0.9   1.2   23.2 2.1 426 GC,CG,UA,AU,GU,UG,AG,UU GC,AG,CA,UU
9550 9550 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support 3 21.5 3.3   16.0 19.0 3.0     6.6 0.3   0.6   0.3   29.0 0.3 331 GC,CG,AU,GU,UG,AG,UU GC,AG,CA,UU
9551 9551 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support B 6.3 3.9   3.4 29.3       10.7     0.5       45.9   205 GC,CG,AU,GU,AG,UU GC,AG,UU
9552 9552 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support A 100.0                                 38 GC  
9553 9553 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support C 30.0   4.0 42.0 16.0 2.0   2.0       4.0           50 GC,UA,AU,GU,UG,AC,CU GC,UA,AU
9554 9554 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support E 22.7 3.4   52.3 3.4 11.4       1.1   1.1   1.1   2.3 1.1 88 GC,CG,AU,GU,UG,UU GC,AU,UG,CA
9555 9555 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support M 4.4   20.0 26.7 11.1 2.2       2.2       8.9   6.7 17.8 45 GC,UA,AU,GU,UG,CA,GG,UU UA,AU,GG

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");