Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

427 rows where header_format = "v4", molecule = "23S" and strength = "Weak" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: reference_base_pair

group_code 7

  • 3 61
  • A 61
  • B 61
  • C 61
  • E 61
  • M 61
  • T 61

conformation 3

tertiary_type 2

strength 1

  • Weak · 427 ✖

molecule 1

  • 23S · 427 ✖

header_format 1

  • v4 · 427 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
3564 3564 23S 1 8 2895   v4 C:G cWW       Weak T 4.9 21.6 31.6 3.3 0.6 15.5 1.8 0.6   3.0 0.3     0.3   0.6 15.7 329 GC,CG,UA,AU,UG,CA GC,CG,UA,AU
3565 3565 23S 1 8 2895   v4 C:G cWW       Weak 3 5.6 27.1 27.5 1.2   19.9         0.4     0.4     18.0 251 GC,CG,UA,UG GC,CG,UA,AU
3566 3566 23S 1 8 2895   v4 C:G cWW       Weak B 3.4 33.3 33.9 1.1   27.7               0.6       177 GC,CG,UA,UG GC,CG,UA,AU
3567 3567 23S 1 8 2895   v4 C:G cWW       Weak A 24.2 24.2 27.3 3.0   3.0         3.0           15.1 33 GC,CG,UA,AU,UG,CC GC,CG,UA,AU
3568 3568 23S 1 8 2895   v4 C:G cWW       Weak C 2.3 6.8 56.8 2.3   2.3 9.1     20.5               44 GC,CG,UA,AU,UG,AA,CA GC,CG,UA,AU
3569 3569 23S 1 8 2895   v4 C:G cWW       Weak E   2.4                             97.4 41 CG  
3570 3570 23S 1 8 2895   v4 C:G cWW       Weak M 2.9   29.4 20.6 5.9   5.9 5.9   2.9           5.9 20.6 34 GC,UA,AU,GU,AA,AC,CA,UU GC,UA,AU
3830 3830 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak T 0.1 49.5 1.5 0.5 0.1 0.8 0.1   0.9 0.1 0.3   0.3 0.3 0.3 0.3 44.8 740 CG GC,CG,UA,AU
3831 3831 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak 3   67.4 1.5     1.5 0.2   0.2 0.2       0.5     28.5 411 CG CG,UA
3832 3832 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak B   94.6 1.6     2.3 0.4   0.4         0.8       257 CG,UG CG,UA
3833 3833 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak A   94.4 5.6                             36 CG,UA CG,UA
3834 3834 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak C   92.7 3.1               1.0       2.1   1.0 96 CG,UA,UC CG,UA
3835 3835 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak E                   0.8             99.1 118    
3836 3836 23S 6.1 66 88   v4 C:G cWW   3°: pseudoknot   Weak M 0.4   0.9 1.7 0.4       2.6   0.4   0.9     0.9 91.7 233 AG UA,GU,AG,CC
4040 4040 23S 10 158 168   v4 U:G cWW       Weak T 0.9 1.2 13.2 0.8   36.6 1.2 0.3 2.1 0.9 0.5   0.4 0.1 0.3 0.3 41.1 759 UA,UG,AG GC,UG,AA
4041 4041 23S 10 158 168   v4 U:G cWW       Weak 3 1.2 2.1 20.9 0.2   55.6 0.5   0.5 0.5     0.7 0.2   0.2 17.4 426 CG,UA,UG GC,AU,UG,CA
4042 4042 23S 10 158 168   v4 U:G cWW       Weak B   2.2 0.4     87.0       0.4       0.4     9.7 270 CG,UG UG,CA
4043 4043 23S 10 158 168   v4 U:G cWW       Weak A           2.8     5.6 2.8             88.9 36 UG,AG,CA AG,CA
4044 4044 23S 10 158 168   v4 U:G cWW       Weak C 1.0   11.1 4.0   41.4 7.1 2.0 14.1 5.1         2.0 1.0 11.1 99 UA,AU,UG,AA,AC,AG,CA,UC GC,UG,AA
4045 4045 23S 10 158 168   v4 U:G cWW       Weak E 4.2 2.5 73.3 0.8   0.8 1.7           2.5     0.8 13.3 120 GC,CG,UA,GA GC,CG,UA,AU
4046 4046 23S 10 158 168   v4 U:G cWW       Weak M 0.4     0.4             1.7           97.4 234   AU,CC
4222 4222 23S 16 274 363   v4 C:G cWW       Weak T 2.3 3.7 4.7 0.2 0.3 2.2 1.3 1.9 0.6 0.8 1.3 0.5 0.8 0.1 0.7 2.6 76.1 872 GC,CG,UA,UG,UU GC,CG,UA,AU
4223 4223 23S 16 274 363   v4 C:G cWW       Weak 3 2.9 6.0 7.5 0.4 0.4 3.5 1.7 3.1 1.0 1.2 2.1 0.8 1.4 0.2 1.2 3.9 62.9 518 GC,CG,UA,UG,AC,CC,UU CG,UA,GU,AC
4224 4224 23S 16 274 363   v4 C:G cWW       Weak B 6.9 26.1 26.8 18.8 0.4 5.1 0.7           0.7     0.4 14.2 276 GC,CG,UA,AU,UG GC,CG,UA,AU
4225 4225 23S 16 274 363   v4 C:G cWW       Weak A 33.3 30.6 8.3     2.8         5.6   5.6   13.9     36 GC,CG,UA,UG,CC,GA,UC GC,CG,UA
4226 4226 23S 16 274 363   v4 C:G cWW       Weak C 1.0 1.0 2.0       2.0 1.0   1.0           1.0 91.0 100 UA,AA GC,CG,UA
4227 4227 23S 16 274 363   v4 C:G cWW       Weak E 0.5 2.9 15.7 0.5 1.0   3.4 7.8 1.0 2.9 4.4 2.0 0.5 0.5 0.5 9.8 46.6 204 CG,UA,AA,AC,CA,CC,CU,UU CG,UA,GU,AC
4228 4228 23S 16 274 363   v4 C:G cWW       Weak M 1.6       0.4 0.4                   0.8 96.9 254   GC,UU
4229 4229 23S 18 281 359   v4 C:G cWW       Weak T 6.2 5.6 3.1 7.4 4.5 2.8 1.6 7.5 0.8 0.6 0.9 2.0 0.7 1.5 0.7 2.5 51.7 869 GC,CG,UA,AU,GU,UG,AC,CU,UU CG,UA,GU,AC
4230 4230 23S 18 281 359   v4 C:G cWW       Weak 3 9.7 8.5 3.5 8.5 7.4 4.1 1.9 12.4 1.4 0.6 1.6 3.1 0.6 2.3 0.6 2.5 31.4 516 GC,CG,UA,AU,GU,UG,AC,CU,GG,UU CG,UA,GU,AC
4231 4231 23S 18 281 359   v4 C:G cWW       Weak B 9.1 9.4 3.3 15.2 12.3 7.6 3.6 22.8 2.5   1.4 1.4 1.1 2.9 0.4 5.1 1.9 276 GC,CG,UA,AU,GU,UG,AA,AC,AG,GG,UU CG,UA,GU,AC
4232 4232 23S 18 281 359   v4 C:G cWW       Weak A 19.4 33.3 25.0 8.3 5.6           2.8       5.6     36 GC,CG,UA,AU,GU,CC,UC GC,CG,UA,AU
4233 4233 23S 18 281 359   v4 C:G cWW       Weak C 4.0 1.0 6.1 17.2 1.0 2.0 2.0 1.0   2.0     3.0 1.0 2.0 9.1 48.3 99 GC,UA,AU,UG,AA,CA,GA,UC,UU GC,CG,UA,AU
4234 4234 23S 18 281 359   v4 C:G cWW       Weak E 8.8 3.4   1.0 1.0         1.5 1.5 5.9   2.5   0.5 74.0 204 GC,CG,CU,GG GC,CU
4235 4235 23S 18 281 359   v4 C:G cWW       Weak M   1.6 1.2 1.2   0.4 0.8         0.4     0.4   94.1 254   CG,UA,AU
4250 4250 23S 18 284 356   v4 U:G cWW       Weak T 5.7 15.1 4.4 6.3 3.4 3.8 2.8 4.3 1.5 1.6 2.1 0.8 0.7 1.4 3.7 4.1 38.3 870 GC,CG,UA,AU,GU,UG,AA,AC,CC,UC,UU GC,CG,UA,AU
4251 4251 23S 18 284 356   v4 U:G cWW       Weak 3 9.5 24.2 5.0 8.3 5.4 4.3 1.9 6.2 2.1 2.1 2.9 1.4 0.8 1.7 5.2 4.8 14.2 517 GC,CG,UA,AU,GU,UG,AC,AG,CA,CC,UC,UU GC,CG,UA,AU
4252 4252 23S 18 284 356   v4 U:G cWW       Weak B 14.4 32.1 8.7 5.4 1.1 5.8 2.5 9.4 1.8 2.9 0.4 2.5 0.4   2.9 6.5 3.3 277 GC,CG,UA,AU,UG,AA,AC,CA,CU,UC,UU GC,CG,UA,AU
4253 4253 23S 18 284 356   v4 U:G cWW       Weak A   72.2 2.8 5.6 2.8 11.1       5.6               36 CG,UA,AU,GU,UG,CA CG,UA,AU
4254 4254 23S 18 284 356   v4 U:G cWW       Weak C 1.0 4.0 9.1 11.1 2.0 10.1 12.1 5.1 2.0 3.0 2.0   2.0 2.0 4.0 7.1 23.2 99 CG,UA,AU,GU,UG,AA,AC,AG,CA,CC,GA,GG,UC,UU GU,UG,AA,CC
4255 4255 23S 18 284 356   v4 U:G cWW       Weak E 4.4 5.4 1.0 12.7 11.8 1.0 1.5 2.9 2.9 0.5 6.4   1.5 4.4 9.3 3.4 30.9 204 GC,CG,AU,GU,AC,AG,CC,GG,UC,UU CG,AU,GA,UC
4256 4256 23S 18 284 356   v4 U:G cWW       Weak M   0.8 1.2 0.4   0.4 0.8       0.4     0.4 0.4 1.6 93.7 254   CG,AA,UU
4313 4313 23S 18 293 347   v4 U:A cWW       Weak T 6.1 1.4 35.2 2.7 1.1 2.4 2.8 1.1 1.5 2.4 0.6 1.0 1.8 1.5 2.1 1.8 34.7 888 GC,UA,AU,UG,AA,CA,UC GC,CG,UA,AU
4314 4314 23S 18 293 347   v4 U:A cWW       Weak 3 10.1 1.9 50.7 1.5 1.1 3.7 2.8 1.3 2.2 1.9 0.9 1.5 2.2 2.2 3.6 1.7 10.6 534 GC,UA,UG,AA,AG,GA,GG,UC GC,UA,AG,CU
4315 4315 23S 18 293 347   v4 U:A cWW       Weak B   1.4 83.5   0.4 4.3 2.2   1.4 0.7     2.9 1.4     1.8 278 UA,UG,AA,GA UA,GU,AG
4316 4316 23S 18 293 347   v4 U:A cWW       Weak A   2.8 44.4   2.8 16.7 19.4             11.1     2.8 36 CG,UA,GU,UG,AA,GG UA,GG
4317 4317 23S 18 293 347   v4 U:A cWW       Weak C   1.0 40.0 8.0     9.0 2.0 1.0 11.0   1.0 3.0 1.0   3.0 20.0 100 UA,AU,AA,AC,CA,GA,UU UA,AU,GG
4318 4318 23S 18 293 347   v4 U:A cWW       Weak E 24.5 2.3 10.5 3.6 1.8 0.9 0.9 3.2 3.6 3.6 2.3 3.6 1.8 1.8 8.6 4.1 22.9 220 GC,CG,UA,AU,AC,AG,CA,CC,CU,UC,UU GC,UA,AG,CU
4319 4319 23S 18 293 347   v4 U:A cWW       Weak M   0.4 0.8 3.1 1.6 0.4 0.4 0.4         0.4     1.6 91.0 254 AU CG,UA,AU
4411 4411 23S 20 327 335   v4 G:C cWW       Weak T 71.8 0.2   1.8       0.1             0.3   25.7 891 GC GC,CG,AU
4412 4412 23S 20 327 335   v4 G:C cWW       Weak 3 96.1 0.4   2.6       0.2             0.2   0.6 537 GC,AU GC,CG,AU
4413 4413 23S 20 327 335   v4 G:C cWW       Weak B 99.3                               0.8 281 GC  
4414 4414 23S 20 327 335   v4 G:C cWW       Weak A 100.0                                 36 GC  
4415 4415 23S 20 327 335   v4 G:C cWW       Weak C 96.0     1.0                         3.0 100 GC GC,AU
4416 4416 23S 20 327 335   v4 G:C cWW       Weak E 91.4 0.9   6.4       0.5             0.5   0.5 220 GC,AU GC,CG,AU
4417 4417 23S 20 327 335   v4 G:C cWW       Weak M 11.0     0.4                     0.8   87.8 254 GC GC,AU
4439 4439 23S 21 378 396   v4 C:G cWW       Weak T 1.2 38.0 1.2 1.1 0.9 32.4     0.2     0.6     0.1   24.3 893 CG,UG GC,CG,UA,AU
4440 4440 23S 21 378 396   v4 C:G cWW       Weak 3 2.0 59.9 1.1 0.4 1.3 35.1                 0.2     538 GC,CG,UG GC,CG,UA,AU
4441 4441 23S 21 378 396   v4 C:G cWW       Weak B 3.2 96.1       0.7                       280 GC,CG GC,CG
4442 4442 23S 21 378 396   v4 C:G cWW       Weak A 5.4 27.0     18.9 48.6                       37 GC,CG,GU,UG GU,UG
4443 4443 23S 21 378 396   v4 C:G cWW       Weak C   4.0   3.0   91.0     2.0                 100 CG,AU,UG,AG AU,UG
4444 4444 23S 21 378 396   v4 C:G cWW       Weak E   19.5 2.7 0.9   76.5                 0.5     221 CG,UA,UG AU,UG
4445 4445 23S 21 378 396   v4 C:G cWW       Weak M   5.1 2.0 2.0 0.4 3.5           2.0         85.1 255 CG,UA,AU,UG,CU CG,UA,AU
4467 4467 23S 21 382 392   v4 A:U cWW       Weak T 2.7 1.1 0.7 22.9 11.3 0.1 0.7 6.9 0.1 0.1   0.2 0.1   0.1 27.4 25.5 894 GC,AU,GU,AC,UU CG,AC,GA,UU
4468 4468 23S 21 382 392   v4 A:U cWW       Weak 3 4.3 1.9   29.3 7.1 0.2   11.1       0.4     0.2 45.5 0.2 539 GC,AU,GU,AC,UU CG,AC,UU
4469 4469 23S 21 382 392   v4 A:U cWW       Weak B 8.2 0.7   56.2 13.5     21.4                   281 GC,AU,GU,AC GC,CG,AU
4470 4470 23S 21 382 392   v4 A:U cWW       Weak A   21.6                           78.4   37 CG,UU CG,UU
4471 4471 23S 21 382 392   v4 A:U cWW       Weak C       40.0 57.0     2.0                 1.0 100 AU,GU,AC GU,AC
4472 4472 23S 21 382 392   v4 A:U cWW       Weak E           0.5           0.9     0.5 97.7 0.5 221 UU  
4473 4473 23S 21 382 392   v4 A:U cWW       Weak M 0.4   2.4 2.7 2.4   2.4   0.4 0.4     0.4       88.6 255 UA,AU,GU,AA GC,UA,AU
4628 4628 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak T 11.9 0.6 0.3 3.7 6.4 3.1 2.7   43.4     0.1 0.1 0.2   1.4 26.1 881 GC,AU,GU,UG,AA,AG GC,AG,UU
4629 4629 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak 3 20.0 1.0   4.0 10.3 5.1 0.6   52.2         0.4   2.3 4.2 525 GC,AU,GU,UG,AG,UU GC,AG,UU
4630 4630 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak B         0.7   1.1   97.5         0.4     0.4 281 AG GU,AG
4631 4631 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak A 70.3     5.4 24.3                         37 GC,AU,GU GC,AU
4632 4632 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak C       1.0     5.0   94.0                 100 AA,AG  
4633 4633 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak E 38.2 2.4   9.2 20.8 13.0               0.5   5.8 10.1 207 GC,CG,AU,GU,UG,UU GC,AU,UG
4634 4634 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak M     1.2 4.3 0.8   6.2   5.5     0.4 0.4       81.3 256 AU,AA,AG GU,AA
4684 4684 23S 25.1 564 577   v4 C:G cWW       Weak T 0.1 97.6 0.2 0.1 0.1       0.1   0.2 0.2         1.2 888 CG CG,UA,GU
4685 4685 23S 25.1 564 577   v4 C:G cWW       Weak 3   99.6                 0.2 0.2           526 CG  
4686 4686 23S 25.1 564 577   v4 C:G cWW       Weak B   99.3                 0.4 0.4           282 CG  
4687 4687 23S 25.1 564 577   v4 C:G cWW       Weak A   100.0                               37 CG  
4688 4688 23S 25.1 564 577   v4 C:G cWW       Weak C   100.0                               100 CG  
4689 4689 23S 25.1 564 577   v4 C:G cWW       Weak E   100.0                               207 CG  
4690 4690 23S 25.1 564 577   v4 C:G cWW       Weak M 0.4 92.7 0.8 0.4 0.4       0.4   0.4 0.4         4.2 262 CG GC,CG,UA,AU
4824 4824 23S 27 600 657   v4 G:U cWW       Weak T 20.1   0.1 1.0 54.1                       24.7 882 GC,GU UA,GU
4825 4825 23S 27 600 657   v4 G:U cWW       Weak 3 33.8   0.2 0.8 65.0                       0.2 520 GC,GU UA,GU
4826 4826 23S 27 600 657   v4 G:U cWW       Weak B         100.0                         282 GU  
4827 4827 23S 27 600 657   v4 G:U cWW       Weak A 21.6     8.1 70.3                         37 GC,AU,GU  
4828 4828 23S 27 600 657   v4 G:U cWW       Weak C       2.0 98.0                         100 AU,GU  
4829 4829 23S 27 600 657   v4 G:U cWW       Weak E 83.6   0.5 0.5 14.9                       0.5 201 GC,GU GC,UA,AU
4830 4830 23S 27 600 657   v4 G:U cWW       Weak M 0.4     1.1 15.6                       82.9 262 GU  
4922 4922 23S 31 641 647   v4 U:G cWW       Weak T   6.2 2.0     39.9 0.1   0.1     0.2 0.2   0.1 0.2 50.8 883 CG,UA,UG UG,CU,GA
4923 4923 23S 31 641 647   v4 U:G cWW       Weak 3   9.4 0.2     50.9                     39.5 521 CG,UG  
4924 4924 23S 31 641 647   v4 U:G cWW       Weak B   14.2 0.4     85.4                       281 CG,UG  
4925 4925 23S 31 641 647   v4 U:G cWW       Weak A   24.3       67.6                     8.1 37 CG,UG  
4926 4926 23S 31 641 647   v4 U:G cWW       Weak C   2.0 8.0     86.0           2.0       2.0   100 CG,UA,UG,CU,UU UG,CU
4927 4927 23S 31 641 647   v4 U:G cWW       Weak E                                 100.0 203    
4928 4928 23S 31 641 647   v4 U:G cWW       Weak M   1.5 3.4     0.4 0.4   0.4       0.8   0.4   92.7 262 UA CG,UA
4929 4929 23S 32 671 809   v4 C:G cWW       Weak T   97.6 0.1 1.1 0.1 0.1   0.1                 0.8 845 CG CG,UA,AU
4930 4930 23S 32 671 809   v4 C:G cWW       Weak 3   99.8                             0.2 483 CG  

Next page

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");