Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

3 rows where group_code = "T" and tertiary_type = "3°: base triple" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

tertiary_type 1

  • 3°: base triple · 3 ✖

strength 1

molecule 1

header_format 1

group_code 1

conformation 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
5174 5174 23S 35 740 757   v4 C:G cWW   3°: base triple   Strong T 0.2 29.0 1.7 6.5 19.5   0.8 1.1   0.5 0.9 0.2     1.2 37.4 0.9 887 CG,AU,GU,UU CG,AC,UU
7722 7722 23S 71 1950 1956   v4 G:U cWW   3°: base triple   Strong T   0.2 13.0 0.4 44.2 9.8 2.0 2.9 0.8 25.4     0.2     1.1   848 UA,GU,UG,AA,AC,CA GU,UG,AC,CA
7848 7848 23S 73 2057 2611   v4 G:C cWW   3°: base triple   Strong T 40.9 2.6 0.1 54.9 1.1     0.3         0.1         727 GC,CG,AU GC,CG,UA,AU

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");