Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

82 rows where group_code = "T" and tertiary_type = "3°: base pair" sorted by position_1

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Suggested facets: reference_base_pair, GU, AC, CA, CC, CU, GA, GG, UC

conformation 7

strength 5

molecule 2

tertiary_type 1

  • 3°: base pair · 82 ✖

header_format 1

group_code 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
3641 3641 23S 2 30 510   v4 G:C cWW   3°: base pair   Strong T 49.1 8.0 2.2 5.0 0.6 0.7 5.9   0.4             0.1 27.8 678 GC,CG,UA,AU,AA GC,CG,AA,UU
351 351 16S 5 47 361   v4 C:G cWW   3°: base pair   Strong T 18.0 65.2 3.2 2.5 0.2 0.4   0.7   0.1 1.4 3.3 1.1 0.5 0.1 2.7 0.4 6093 GC,CG,UA,AU,CU,UU GC,CG,UA,AU
3753 3753 23S 5 53 117   v4 A:G tHS   3°: base pair   Significant T   0.4 1.5 2.1     0.8 0.3 66.2         0.1   0.3 28.1 719 AU,AG UA,AG
435 435 16S 6 68 101   v4 G:A cWW   3°: base pair   Weak T 3.1 0.3 13.9 0.7 0.3 0.3 0.2   0.1 0.2     68.8 0.4   0.2 11.6 6584 GC,UA,GA AU,UG,GA
596 596 16S 7 129 232   v4 A:G cWW   3°: base pair   Strong T 1.4 13.5 19.1 2.7 0.4 22.5 2.5 2.0 29.0 0.5 0.3 0.1 1.9 0.3 0.4 0.7 2.5 6964 CG,UA,AU,UG,AA,AC,AG GC,UA,AG,CU
673 673 16S 8 145 177   v4 G:G cWW   3°: base pair   Strong T 8.1 17.8 1.9 6.8 0.3 15.1 0.3 0.2 0.2 0.1   0.3 0.1 28.0   9.4 11.4 7032 GC,CG,AU,UG,GG,UU AA,GG,UU
694 694 16S 8 152 169   v4 A:C tHW   3°: base pair   Strong T 0.2     0.4 7.2 0.2 2.5 69.9 0.4 0.1 2.1 0.4 0.7 3.7 0.2 0.1 11.9 7096 GU,AA,AC,CC,GG GU,UG,AC,CA
841 841 16S 11 245 283   v4 U:U cWW   3°: base pair   Strong T     0.1 0.1 0.2     0.1     42.1 0.1     0.2 56.3 0.5 7222 CC,UU CC,UU
4390 4390 23S 19.2 319 323   v4 G:C cWW   3°: base pair   Strong T 10.1 59.5 0.6 0.4 0.1 2.6 0.1   0.1       0.4 0.2     25.7 892 GC,CG,UG GC,CG,UA,AU
1016 1016 16S 13 321 332   v4 A:G cWW   3°: base pair   Strong T   14.2 1.5 0.1     0.1 0.1 71.5   0.1       0.3   12.0 7470 CG,AG UA,AG,CC
1051 1051 16S 15 367 393   v4 U:A cWW   3°: base pair   Strong T 0.6 2.7 95.7 0.1   0.4       0.1           0.1 0.2 7180 CG,UA GC,CG,UA,AU
4474 4474 23S 21 383 391   v4 C:A cWW   3°: base pair   ??? T   0.1 0.4     0.4 0.1     41.5     0.6       56.8 894 CA UG,CA
1170 1170 16S 17 438 496   v4 U:A tWH   3°: base pair   Strong T     53.9     0.2 1.5   0.3       1.5 16.2   0.2 25.9 6924 UA,GG UA,GG
1177 1177 16S 17 440 497   v4 C:G cWW   3°: base pair   Strong T 0.3 35.2 10.6 2.7   2.0 0.6   0.1 0.5 0.4 0.1 0.7 0.1 0.3 19.5 26.9 6937 CG,UA,AU,UG,UU CG,GA,UU
1184 1184 16S 17 441 493   v4 A:A cWW   3°: base pair   Strong T 10.1 6.6 0.7 6.1 2.5 2.0 28.3 1.7 0.9 0.3   0.1 12.4 1.2 0.1 0.1 26.7 6927 GC,CG,AU,GU,UG,AA,GA GC,CG,AA,UU
1226 1226 16S 17 450 483   v4 G:C cWW   3°: base pair   Strong T 66.4 0.7 1.8 0.9   0.2 0.2 0.1     0.1   0.1 0.1 0.1   29.2 7036 GC GC,CG,UA,AU
4586 4586 23S 24.1 531 2018   v4 C:G cWW   3°: base pair   Strong T 2.5 57.3 8.6 3.7 1.0 1.3 20.1   0.4 0.8 0.6 0.1 1.0 0.4   0.1 1.9 775 GC,CG,UA,AU,AA GC,CG,AA,UU
4621 4621 23S 25 537 556   v4 G:A cWW   3°: base pair   Strong T 3.3 2.6 17.7 3.2 0.2 0.1 8.3 0.3 0.2 0.1   0.1 37.8 0.1   0.5 25.4 883 GC,CG,UA,AU,AA,GA CG,AU,GA
4628 4628 23S 25 538 555   v4 A:G cWW   3°: base pair   Weak T 11.9 0.6 0.3 3.7 6.4 3.1 2.7   43.4     0.1 0.1 0.2   1.4 26.1 881 GC,AU,GU,UG,AA,AG GC,AG,UU
4677 4677 23S 25.1 563 578   v4 A:G cWW   3°: base pair   Strong T   24.0 1.5     1.6 17.3   21.8       32.2 0.1     1.4 888 CG,AA,AG,GA CG,GA
4691 4691 23S 25.1 565 576   v4 C:U cWW   3°: base pair   Strong T 27.4 2.1 0.1 0.6 0.6     0.3   0.1   65.8     1.5 0.3 1.2 888 GC,CG,CU GC,UA,CU
1429 1429 16S 19.1 575 880   v4 G:C cWW   3°: base pair   Strong T 81.5   0.1 16.1 0.6   0.1 0.7     0.1     0.1 0.2   0.4 6647 GC,AU GC,UA,AU
1464 1464 16S 20 582 758   v4 C:C No BP   3°: base pair   Strong T 0.1 7.6 7.8 0.1   52.0 0.9 0.2 0.1 0.5 10.5 0.5   0.1 15.3 0.3 3.9 6988 CG,UA,UG,CC,UC UG,AA,CC
1618 1618 16S 21 611 629   v4 C:A cWW   3°: base pair   Strong T 0.3 14.6 3.4 1.6 2.1 3.1 2.5 0.3 2.6 34.3 1.3 1.2 1.3 0.6 0.6 0.5 29.5 7041 CG,UA,GU,UG,AA,AG,CA GU,UG,AC,CA
4894 4894 23S 31 637 651   v4 A:G cWW   3°: base pair   Strong T 2.9 1.2 0.6 1.9 0.1 0.3 2.7 0.6 38.4         0.3   0.1 50.7 883 GC,AA,AG GC,UA,AG
1723 1723 16S 22 663 742   v4 A:G cWW   3°: base pair   Strong T 0.8 5.7 4.4 1.0 0.6 7.7 2.1 1.3 69.3 0.7 0.8 0.7 0.3 0.2 0.5 1.1 2.8 7099 CG,UA,UG,AA,AG UA,GU,AG,CC
1786 1786 16S 23 674 716   v4 G:A cWW   3°: base pair   Strong T 17.4 0.1 0.2 0.7 0.1 0.1 8.7   0.2 0.1     71.5 0.1     0.6 7153 GC,AA,GA CG,AU,GA
4943 4943 23S 32 674 806   v4 G:C cWW   3°: base pair   ??? T 97.9   0.9 0.2 0.1 0.1   0.1     0.1           0.4 843 GC GC,UA,AU
5069 5069 23S 33 698 763   v4 C:G cWW   3°: base pair   Strong T 0.5 79.5 13.8 1.4   1.2 0.7   0.1 0.9 0.2 0.3 0.1 0.5 0.2 0.1 0.6 887 CG,UA GC,CG,UA,AU
5146 5146 23S 34 713 718   v4 G:A cWW   3°: base pair   Strong T 21.1 5.1 1.5 1.0 0.2 0.2 0.5 0.1   0.9     41.4 0.5 0.2   27.3 886 GC,CG,GA CG,AU,GA,UC
1870 1870 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong T 0.2 0.7 3.0 1.6 0.9 0.7 29.5 0.3 5.1 0.4 0.1 0.1 1.3 55.1 0.1 0.2 0.7 7189 UA,AA,AG,GG AA,CC,GG,UU
5363 5363 23S 38 847 933   v4 U:A cWW   3°: base pair   Strong T 6.9 3.7 15.3 17.5 0.8 1.5 1.2 0.8 0.6 0.9     0.1 2.3 0.2 0.1 47.8 855 GC,CG,UA,AU,GG GC,CG,UA,AU
5433 5433 23S 38 857 920   v4 G:A cWW   3°: base pair   Strong T 2.9 7.4 2.9 3.4 1.2 3.3 5.6 0.1 17.7   0.1   28.8     0.6 26.0 857 GC,CG,UA,AU,UG,AA,AG,GA AG,CC,GA,UU
2304 2304 16S 30 945 1236   v4 G:A cWW   3°: base pair   Strong T 0.1           0.8   0.4 0.1     98.2       0.2 6663 GA AG,GA
2570 2570 16S 33.2 1026 1035   v4 G:A cWW   3°: base pair   Strong T 0.6 15.0 2.1 0.3   0.7 0.2     0.1   0.1 20.3 0.1     60.3 6954 CG,UA,GA CG,AU,GA
5797 5797 23S 42 1032 1122   v4 A:G cWW   3°: base pair   Strong T 24.4 0.5 1.2 1.8   2.2 1.6 0.4 39.2 0.2     0.7     0.2 27.5 849 GC,UG,AG GC,UA,AG
5839 5839 23S 42 1039 1116   v4 A:G cWW   3°: base pair   Strong T 10.6 2.3 25.8 18.3 7.2 0.1 1.3 1.1 5.1   0.5 0.1   0.4 0.4   26.7 856 GC,CG,UA,AU,GU,AG GC,CG,UA,AU
5846 5846 23S 42 1040 1115   v4 A:G cWW   3°: base pair   Strong T 8.4 3.5 31.6 14.8 0.9 1.0 0.9 0.2 7.1 3.8     0.7       26.9 858 GC,CG,UA,AU,AG,CA GC,CG,UA,AU
2668 2668 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support T 91.4     6.3 1.9                 0.1     0.2 6774 GC,AU GC,AU
2675 2675 16S 34 1062 1194   v4 U:U cWW   3°: base pair   Strong T   1.5 18.1 0.1   1.7           0.3     0.1 77.9 0.2 6909 UA,UU CG,UU
5951 5951 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong T 0.1 26.9 45.2 1.0 0.1 0.1 0.1     0.1     0.1 0.1 0.3 0.8 24.8 870 CG,UA GC,CG,UA,AU
5958 5958 23S 44 1087 1102   v4 G:C cWW   3°: base pair   Strong T 88.0 0.5 1.8 6.8 0.9   0.2 0.1   0.2 0.2         0.3 0.8 867 GC,AU GC,CG,UA,AU
6042 6042 23S 46 1196 1250   v4 C:G cWW   3°: base pair   Strong T 0.9 76.3 13.7 1.3 0.2 0.9 0.3   0.2 3.8   0.1   0.2 0.1 0.6 1.3 864 CG,UA,CA GC,CG,UA,AU
6084 6084 23S 46 1203 1242   v4 U:U cWW   3°: base pair   Strong T 18.7 10.0 32.9 15.2 0.5 1.8 0.3     0.2 0.6   0.3   0.1 16.2 3.0 870 GC,CG,UA,AU,UU GC,CG,UA,AU
6091 6091 23S 46 1204 1241   v4 A:A cWW   3°: base pair   Strong T 13.1 2.8 14.4 6.3 0.7 18.2 14.3   0.1 2.0   0.3 0.9 0.5 0.7 2.0 23.7 868 GC,CG,UA,AU,UG,AA,CA,UU GC,UG,AA,CU
6182 6182 23S 46.1 1263 2016   v4 U:U cWW   3°: base pair   Strong T 21.4   0.4 1.0           0.1 1.6   0.4 1.0   72.8 1.2 802 GC,UU GC,CA,UU
3060 3060 16S 42 1303 1334   v4 C:G cWW   3°: base pair   Strong T 15.0 83.0 0.6 0.3   0.3     0.1 0.1       0.1   0.4   7168 GC,CG GC,CG,UA,AU
3067 3067 16S 42 1307 1330   v4 U:U cWW   3°: base pair   Strong T 0.1     2.2 0.4 0.2 3.4 2.3 1.6 0.1 2.3 0.8 0.1 0.1 0.2 86.1 0.1 7180 AU,AA,AC,CC,UU AA,CC,GG,UU
6406 6406 23S 51 1348 1598   v4 C:A cWW   3°: base pair   Significant T 29.1   7.8 1.3 0.6 0.5 1.5 0.8 0.1 15.5 0.6 0.2 0.1     0.1 41.5 844 GC,UA,CA GC,AU,UG,CA
3172 3172 16S 43 1357 1365   v4 A:G cWW   3°: base pair   Strong T 14.0 0.4 1.9 0.7 0.1 0.6 1.3   73.1 0.3     6.7 0.6     0.1 7030 GC,AG,GA GC,UA,AG
6448 6448 23S 52 1359 1372   v4 A:U cWW   3°: base pair   Strong T 2.7 0.6 1.3 42.6 0.1 0.2 0.5 0.7   0.3 0.5   0.1   0.6 1.0 48.8 862 GC,AU GC,CG,UA,AU
3179 3179 16S 44 1399 1504   v4 C:G cWW   3°: base pair   Strong T   97.1 2.0     0.3       0.1 0.1 0.1         0.3 3570 CG,UA CG,UA
3193 3193 16S 44 1402 1500   v4 C:A cWW   3°: base pair   Strong T   0.1 0.1     0.2       99.3     0.1       0.2 3767 CA UG,CA
3214 3214 16S 44 1407 1494   v4 C:G cWW   3°: base pair   ??? T   99.1       0.2       0.3 0.2 0.1   0.1     0.1 3780 CG  
3249 3249 16S 44 1413 1487   v4 A:G cWW   3°: base pair   Strong T   17.3 18.3 0.4   0.1 0.1   62.7 0.4   0.2     0.2     4800 CG,UA,AG UA,AG,CU
6637 6637 23S 55 1425 1573   v4 G:G cWW   3°: base pair   Strong T 0.9 4.3 8.1 15.1 0.6 12.2 0.2     0.1   0.1   28.0 0.1   30.1 860 CG,UA,AU,UG,GG UA,AU,GG
6910 6910 23S 59 1527 1544   v4 G:A No BP   3°: base pair   Strong T 1.9 18.8 3.7 1.6 7.7 0.3 1.0   0.2 2.8 0.2 0.1 20.0 0.2 0.1 0.3 40.8 861 CG,UA,GU,CA,GA CG,AU,GA,UC
6917 6917 23S 59 1528 1543   v4 A:G tHS   3°: base pair   Strong T 5.7 7.2 4.7 11.2 0.6 1.0 0.9 0.2 21.4 0.2 0.1 0.1       1.5 44.9 859 GC,CG,UA,AU,AG GC,UA,AG,CU
7141 7141 23S 62 1690 1697   v4 A:G tHS   3°: base pair   Strong T       0.4 0.4   10.8   53.5 2.9   0.4 0.1     3.9 27.7 836 AA,AG,CA,UU AG,CA,UU
7246 7246 23S 63.1 1752 1756   v4 C:G cWW   3°: base pair   Strong T 22.1 36.4 6.9 1.9 0.5 2.2 0.6       0.1     0.6 0.5   28.2 836 GC,CG,UA,UG GC,CG,UA,AU
7400 7400 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong T   64.6 1.1 16.5 0.1 0.1 0.4 0.2 0.1 8.2 0.4 0.2         7.9 842 CG,AU,CA CG,UA,AU
7407 7407 23S 66 1803 1814   v4 A:G tHS   3°: base pair   Weak T 0.5 0.4 0.6 1.5 20.2 0.1 7.6 2.6 37.5 0.2 0.1 0.1       0.2 28.2 840 GU,AA,AC,AG UA,GU,AG,CC
7554 7554 23S 68 1855 1887   v4 U:C cWW   3°: base pair   Strong T 13.3 0.7 0.1 6.9 13.6   1.2 1.4 0.8 0.2 0.2 0.8 0.3   7.2 0.2 53.0 867 GC,AU,GU,UC CG,GU,AA,UC
7561 7561 23S 68 1856 1886   v4 U:U cWW   3°: base pair   Strong T 18.6 0.6 1.0 15.8 0.1     0.2         0.6     9.9 53.1 867 GC,AU,UU GC,CG,UA,AU
7568 7568 23S 68 1858 1884   v4 A:G tHS/tSH   3°: base pair   Strong T 0.2 0.3 0.9 1.3 0.2   3.2   19.9 0.5     20.3       53.1 868 AA,AG,GA AG,GA
7575 7575 23S 68 1859 1883   v4 U:U cWW   3°: base pair   Strong T 10.9 0.3 0.6 1.7 1.7 0.3 0.5 0.2 19.7         0.1 0.1 10.4 53.3 869 GC,AG,UU GC,AG,UU
7673 7673 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong T   74.5 1.2 0.5   23.3           0.1       0.2 0.1 848 CG,UG CG,UA,AU
7974 7974 23S 75 2086 2233   v4 U:U cWW   3°: base pair   Strong T 5.2 2.6 44.9 14.8 0.8 0.6 0.7 1.8   7.7 0.1 0.1 0.4   0.7 18.4 1.1 846 GC,CG,UA,AU,CA,UU GC,CG,UA,AU
8086 8086 23S 76 2104 2185   v4 C:U cWW   3°: base pair   Strong T 2.7 15.5 24.6 5.3 1.8 9.3   0.2       5.8 0.1   1.4 1.7 31.6 846 GC,CG,UA,AU,UG,CU GC,CG,UA,AU
8121 8121 23S 76 2109 2180   v4 U:U cWW   3°: base pair   Weak T 18.1   3.9 0.5 0.1 1.2 0.1     0.4   0.4     0.6 42.7 32.0 847 GC,UA,UU GC,CA,UU
8408 8408 23S 81.1 2282 2427   v4 G:C cWW   3°: base pair   Strong T 78.8 0.8 5.5 6.5 0.7   1.7 4.6     0.2         0.6 0.6 844 GC,UA,AU,AC GC,CG,UA,AU
8604 8604 23S 86 2351 2366   v4 G:A cWW   3°: base pair   Weak T 4.9 0.8 10.5 4.6 1.1 0.2 26.9 0.8 0.1 1.6   0.1 40.8 0.1 0.6 0.4 6.4 849 GC,UA,AU,AA,GA CG,AU,GA,UC
8611 8611 23S 86 2352 2365   v4 A:G cWW   3°: base pair   Strong T 0.7 2.9 2.9 22.9 0.4 0.2 14.8 0.6 39.5 0.4 0.1 0.5 0.1   0.1 0.8 13.1 849 CG,UA,AU,AA,AG GC,UA,AG,CU
8821 8821 23S 90 2507 2582   v4 C:G cWW   3°: base pair   Strong T   72.4 27.6                             778 CG,UA CG,UA
8856 8856 23S 90 2512 2574   v4 C:G cWW   3°: base pair   Strong T 0.1 90.9 5.8 0.1   2.0       0.4 0.4         0.1 0.1 781 CG,UA,UG GC,CG,UA,AU
9178 9178 23S 96 2675 2732   v4 A:G cWW   3°: base pair   Strong T 0.3 2.4 3.0 1.8 4.6 0.6 0.8 0.7 38.3 5.0 0.4 1.0 1.5 0.4 6.9 9.8 22.6 723 CG,UA,GU,AG,CA,UC,UU GC,AG,CA,UU
9416 9416 23S 99 2808 2891   v4 G:U No BP   3°: base pair   ??? T 0.7 1.7 39.9 7.6 9.7 4.3 1.7 0.2 1.4 3.3     2.4 0.5   1.0 25.5 421 UA,AU,GU,UG,CA,GA CG,UA,GU,AC
9437 9437 23S 99 2813 2887   v4 A:A cWW   3°: base pair   Strong T 19.0 23.1 36.7 7.1 0.5 0.2 4.8         1.4 0.5 0.5   1.7 4.6 420 GC,CG,UA,AU,AA GC,CG,UA,AU
9444 9444 23S 99 2814 2886   v4 A:A cWW   3°: base pair   Strong T 1.0 60.7 10.0 2.4   7.9 7.4   1.0 0.5 1.0 1.7       1.0 5.7 420 CG,UA,AU,UG,AA GC,CG,UA,AU
9542 9542 23S 101 2844 2872   v4 G:A cWW   3°: base pair   Strong T 7.0 0.7 2.6 3.0 3.5 0.7 7.7   33.7 0.5 0.7   13.8 4.4 0.7 16.4 4.4 427 GC,UA,AU,GU,AA,AG,GA,GG,UU AG,CC,GA,UU
9549 9549 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support T 20.7 2.6 2.6 20.2 17.8 2.8   0.2 5.2 0.5   0.9   1.2   23.2 2.1 426 GC,CG,UA,AU,GU,UG,AG,UU GC,AG,CA,UU
9563 9563 23S 101 2849 2866   v4 U:U No BP   3°: base pair   Strong T     0.7   1.8 3.8   0.4 0.2 0.2   0.9 0.4 26.2 1.1 57.5 6.7 447 UG,GG,UU AC,CA,GG,UU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");