Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

3 rows where group_code = "M" and tertiary_type = "3°: base triple" sorted by position_1

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Suggested facets: covarying_types

tertiary_type 1

  • 3°: base triple · 3 ✖

strength 1

molecule 1

header_format 1

group_code 1

conformation 1

Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
5180 5180 23S 35 740 757   v4 C:G cWW   3°: base triple   Strong M 0.8 6.5 5.7 21.7 52.1   0.4 1.5     1.1         9.5 0.8 263 CG,UA,AU,GU,UU CG,UA,GU,AC
7728 7728 23S 71 1950 1956   v4 G:U cWW   3°: base triple   Strong M   0.6 30.5 0.6 6.8 22.8 3.5 7.4 2.3 24.1           1.3   311 UA,GU,UG,AA,AC,AG,CA CG,UA,GU,AC
7854 7854 23S 73 2057 2611   v4 G:C cWW   3°: base triple   Strong M 11.8     84.7 3.1               0.4         262 GC,AU,GU GC,AU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");