Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

42 rows where conformation = "tWW", header_format = "v4" and strength = "Strong" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, GC, CG, UA, AU, GU, UG, AA, AC, AG, CA, CU, GA, UU, gap, predominant_types, covarying_types

group_code 7

tertiary_type 2

molecule 2

strength 1

  • Strong · 42 ✖

header_format 1

conformation 1

  • tWW · 42 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
4117 4117 23S 12.1 234 430   v4 U:A tWW       Strong T   3.8 69.1 0.1   0.8 0.7 0.1 0.1 0.2     0.1     0.2 24.7 866 CG,UA CG,UA,AU
4118 4118 23S 12.1 234 430   v4 U:A tWW       Strong 3   4.7 92.6     1.2 0.6   0.2 0.2             0.6 512 CG,UA CG,UA
4119 4119 23S 12.1 234 430   v4 U:A tWW       Strong B   8.3 91.3                           0.4 276 CG,UA CG,UA
4120 4120 23S 12.1 234 430   v4 U:A tWW       Strong A   2.8 91.7           2.8 2.8               36 CG,UA,AG,CA CG,UA
4121 4121 23S 12.1 234 430   v4 U:A tWW       Strong C     100.0                             100 UA  
4122 4122 23S 12.1 234 430   v4 U:A tWW       Strong E     94.5     3.0 1.5                   1.0 200 UA,UG  
4123 4123 23S 12.1 234 430   v4 U:A tWW       Strong M   3.5 9.4 0.4   0.4 1.2 0.4   0.4     0.4     0.8 83.1 254 CG,UA CG,UA,AU
1870 1870 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong T 0.2 0.7 3.0 1.6 0.9 0.7 29.5 0.3 5.1 0.4 0.1 0.1 1.3 55.1 0.1 0.2 0.7 7189 UA,AA,AG,GG AA,CC,GG,UU
1871 1871 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong 3 0.1   2.1 0.1 0.7 0.1 29.7 0.1 2.4       1.4 63.1     0.1 6134 UA,AA,AG,GG AA,GG
1872 1872 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong B 0.2       0.2 0.1 24.5   2.9       0.5 71.3     0.1 4860 AA,AG,GG AA,GG
1873 1873 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong A         0.8   20.3   0.4         78.4       241 AA,GG AA,GG
1874 1874 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong C           0.6 75.4   1.8         21.6     0.6 167 AA,GG AA,GG
1875 1875 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong E 0.1 0.1 12.2 0.3 3.3 0.1 56.2 0.2 0.7       5.9 20.6     0.3 1033 UA,GU,AA,GA,GG AA,GG
1876 1876 16S 23.1 722 733   v4 G:G tWW   3°: base pair   Strong M 0.2 5.2 10.2 12.1 1.8 4.4 19.3 1.9 24.0 3.3 0.9 1.0 1.2 6.0 1.1 2.8 4.5 896 CG,UA,AU,UG,AA,AG,CA,GG,UU UA,GU,AG,CC
5951 5951 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong T 0.1 26.9 45.2 1.0 0.1 0.1 0.1     0.1     0.1 0.1 0.3 0.8 24.8 870 CG,UA GC,CG,UA,AU
5952 5952 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong 3   46.9 52.3     0.2             0.2       0.4 495 CG,UA CG,UA
5953 5953 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong B   0.8 98.8                   0.4         247 UA CG,UA
5954 5954 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong A   59.5 40.5                             37 CG,UA CG,UA
5955 5955 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong C     98.0                       2.0     100 UA,UC  
5956 5956 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong E   98.6       0.5                     1.0 211 CG  
5957 5957 23S 43.1 1082 1086   v4 U:A tWW   3°: base pair   Strong M 0.4 0.7 13.1 3.3 0.4   0.4     0.4       0.4 0.4 2.5 78.2 275 UA,AU,UU GC,CG,UA,AU
7337 7337 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong T   0.1 2.1             0.1 60.3         36.9 0.5 770 UA,CC,UU CC,UU
7338 7338 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong 3                     37.9         61.9 0.2 412 CC,UU CC,UU
7339 7339 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong B                     63.1         36.9   236 CC,UU CC,UU
7340 7340 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong A                     17.1         82.9   41 CC,UU CC,UU
7341 7341 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong C                     100.0             95 CC  
7342 7342 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong E                               99.3 0.7 135 UU  
7343 7343 23S 65.1 1782 2586   v4 U:U tWW   3°: pseudoknot   Strong M   0.4 6.1             0.4 81.0         11.0 1.2 263 UA,CC,UU CC,UU
7400 7400 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong T   64.6 1.1 16.5 0.1 0.1 0.4 0.2 0.1 8.2 0.4 0.2         7.9 842 CG,AU,CA CG,UA,AU
7401 7401 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong 3   66.6 0.9 29.5 0.2 0.2 0.4 0.4 0.2               1.5 458 CG,AU CG,UA,AU
7402 7402 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong B   100.0                               262 CG  
7403 7403 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong A   100.0                               41 CG  
7404 7404 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong C   39.6               60.4               101 CG,CA  
7405 7405 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong E   1.3 5.8 87.1 0.6 0.6 1.3 1.3 0.6               1.3 155 UA,AU CG,UA,AU
7406 7406 23S 66 1800 1817   v4 C:G tWW   3°: base pair   Strong M   70.3 1.8 1.4     0.4     2.8 1.1 0.7         21.6 283 CG,CA CG,UA,AU
7673 7673 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong T   74.5 1.2 0.5   23.3           0.1       0.2 0.1 848 CG,UG CG,UA,AU
7674 7674 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong 3   54.8       44.7           0.2         0.2 436 CG,UG  
7675 7675 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong B   99.2                   0.4         0.4 241 CG  
7676 7676 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong A           100.0                       41 UG  
7677 7677 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong C   100.0                               101 CG  
7678 7678 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong E           99.4                     0.6 155 UG  
7679 7679 23S 69.1 1925 1929   v4 C:G tWW   3°: base pair   Strong M   93.9 3.2 1.3   1.0                   0.6   311 CG,UA CG,UA,AU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");