Base-pair frequencies
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- header_format
- legacy = entry not yet revised to the v4 layout (no type / conformation).
1 row where conformation = "tHS/tSH", group_code = "B" and header_format = "v4" sorted by position_1
This data as json, CSV (advanced)
tertiary_type 1
strength 1
- Strong 1
molecule 1
- 23S 1
header_format 1
- v4 · 1 ✖
group_code 1
- B · 1 ✖
conformation 1
- tHS/tSH · 1 ✖
| Link | rowid | molecule | helix_number | position_1 ▼ | position_2 | pair_note | header_format | reference_base_pair | conformation | ai_code | tertiary_type | header_extra | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | Seq | predominant_types | covarying_types |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7570 | 7570 | 23S | 68 | 1858 | 1884 | v4 | A:G | tHS/tSH | 3°: base pair | Strong | B | 0.8 | 1.2 | 35.8 | 61.9 | 0.4 | 260 | AG,GA | AG,GA |
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JSON shape: default, array, newline-delimited
CREATE TABLE "basepair_frequency" (
"molecule" TEXT,
"helix_number" TEXT,
"position_1" INTEGER,
"position_2" INTEGER,
"pair_note" TEXT,
"header_format" TEXT,
"reference_base_pair" TEXT,
"conformation" TEXT,
"ai_code" TEXT,
"tertiary_type" TEXT,
"header_extra" TEXT,
"strength" TEXT,
"group_code" TEXT,
"GC" REAL,
"CG" REAL,
"UA" REAL,
"AU" REAL,
"GU" REAL,
"UG" REAL,
"AA" REAL,
"AC" REAL,
"AG" REAL,
"CA" REAL,
"CC" REAL,
"CU" REAL,
"GA" REAL,
"GG" REAL,
"UC" REAL,
"UU" REAL,
"gap" REAL,
"Seq" INTEGER,
"predominant_types" TEXT,
"covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
ON "basepair_frequency" ("molecule", "position_1", "position_2");