Base-pair frequencies

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
header_format
legacy = entry not yet revised to the v4 layout (no type / conformation).

77 rows where conformation = "cWW" and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, CG, UA, GU, UG, AA, AC, CA, CC, CU, GG, gap, predominant_types, covarying_types

group_code 7

  • 3 11
  • A 11
  • B 11
  • C 11
  • E 11
  • M 11
  • T 11

tertiary_type 2

molecule 2

strength 1

  • No Support · 77 ✖

header_format 1

conformation 1

  • cWW · 77 ✖
Link rowid molecule helix_number position_1 ▼ position_2 pair_note header_format reference_base_pair conformation ai_code tertiary_type header_extra strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap Seq predominant_types covarying_types
1380 1380 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support T 99.5       0.1     0.1           0.1     0.2 6570 GC  
1381 1381 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support 3 99.5       0.1     0.1           0.1     0.1 5577 GC  
1382 1382 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support B 99.4       0.1     0.1           0.1     0.2 4373 GC  
1383 1383 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support A 99.5                         0.5       203 GC  
1384 1384 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support C 99.4                   0.6             170 GC  
1385 1385 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support E 99.8             0.1                 0.1 1001 GC  
1386 1386 16S 18 521 528   v4 G:C cWW   3°: pseudoknot   No Support M 99.6       0.1                 0.1     0.1 831 GC  
4698 4698 23S 25.1 566 575   v4 U:A cWW       No Support T     98.6     0.1                     1.2 887 UA  
4699 4699 23S 25.1 566 575   v4 U:A cWW       No Support 3     99.8     0.2                       525 UA  
4700 4700 23S 25.1 566 575   v4 U:A cWW       No Support B     100.0                             281 UA  
4701 4701 23S 25.1 566 575   v4 U:A cWW       No Support A     100.0                             37 UA  
4702 4702 23S 25.1 566 575   v4 U:A cWW       No Support C     100.0                             100 UA  
4703 4703 23S 25.1 566 575   v4 U:A cWW       No Support E     99.5     0.5                       207 UA  
4704 4704 23S 25.1 566 575   v4 U:A cWW       No Support M     95.8                           4.2 262 UA  
2185 2185 16S 28 924 1392   v4 C:G cWW       No Support T   99.3       0.1       0.1 0.1 0.1   0.2     0.1 5980 CG  
2186 2186 16S 28 924 1392   v4 C:G cWW       No Support 3   99.6       0.1           0.1         0.1 4928 CG  
2187 2187 16S 28 924 1392   v4 C:G cWW       No Support B   99.6       0.1           0.1         0.1 3785 CG  
2188 2188 16S 28 924 1392   v4 C:G cWW       No Support A   100.0                               169 CG  
2189 2189 16S 28 924 1392   v4 C:G cWW       No Support C   99.4                 0.6             154 CG  
2190 2190 16S 28 924 1392   v4 C:G cWW       No Support E   99.5             0.1 0.1 0.1           0.2 973 CG  
2191 2191 16S 28 924 1392   v4 C:G cWW       No Support M 0.2 98.3     0.1 0.2       0.1       1.0       899 CG GC,CG
2402 2402 16S 31 963 972   v4 G:C cWW       No Support T 99.4             0.1                 0.4 6866 GC  
2403 2403 16S 31 963 972   v4 G:C cWW       No Support 3 99.5             0.1     0.1           0.3 5549 GC  
2404 2404 16S 31 963 972   v4 G:C cWW       No Support B 99.5             0.1                 0.2 4342 GC  
2405 2405 16S 31 963 972   v4 G:C cWW       No Support A 100.0                                 201 GC  
2406 2406 16S 31 963 972   v4 G:C cWW       No Support C 100.0                                 163 GC  
2407 2407 16S 31 963 972   v4 G:C cWW       No Support E 99.5             0.2     0.1           0.2 1006 GC  
2408 2408 16S 31 963 972   v4 G:C cWW       No Support M 99.9       0.1                         1153 GC  
2668 2668 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support T 91.4     6.3 1.9                 0.1     0.2 6774 GC,AU GC,AU
2669 2669 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support 3 97.0     0.3 2.3           0.1     0.1     0.1 5466 GC,GU GC,AU
2670 2670 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support B 99.4       0.4                 0.1       4267 GC  
2671 2671 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support A 36.0     7.6 55.8                       0.5 197 GC,AU,GU  
2672 2672 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support C 100.0                                 162 GC  
2673 2673 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support E 99.3       0.2           0.2     0.1     0.2 998 GC  
2674 2674 16S 34 1061 1195   v4 G:C cWW   3°: base pair   No Support M 63.7     35.5 0.3     0.2           0.1 0.1   0.2 1151 GC,AU GC,AU
6308 6308 23S 49.1 1310 1604   v4 G:C cWW       No Support T 72.3           0.1 0.1         0.2       27.1 839 GC GC,AA
6309 6309 23S 49.1 1310 1604   v4 G:C cWW       No Support 3 99.6             0.2                 0.2 464 GC  
6310 6310 23S 49.1 1310 1604   v4 G:C cWW       No Support B 100.0                                 262 GC  
6311 6311 23S 49.1 1310 1604   v4 G:C cWW       No Support A 100.0                                 41 GC  
6312 6312 23S 49.1 1310 1604   v4 G:C cWW       No Support C 100.0                                 100 GC  
6313 6313 23S 49.1 1310 1604   v4 G:C cWW       No Support E 98.8             0.6                 0.6 161 GC  
6314 6314 23S 49.1 1310 1604   v4 G:C cWW       No Support M 16.4           0.4           0.7       82.6 275 GC GC,AA
7855 7855 23S 74 2064 2446   v4 C:G cWW       No Support T   99.0 0.6     0.2                     0.1 831 CG CG,UA
7856 7856 23S 74 2064 2446   v4 C:G cWW       No Support 3   99.3       0.5                     0.2 423 CG  
7857 7857 23S 74 2064 2446   v4 C:G cWW       No Support B   98.7       0.8                     0.4 239 CG  
7858 7858 23S 74 2064 2446   v4 C:G cWW       No Support A   100.0                               41 CG  
7859 7859 23S 74 2064 2446   v4 C:G cWW       No Support C   100.0                               99 CG  
7860 7860 23S 74 2064 2446   v4 C:G cWW       No Support E   100.0                               143 CG  
7861 7861 23S 74 2064 2446   v4 C:G cWW       No Support M   98.4 1.6                             309 CG CG,UA
7918 7918 23S 74 2074 2435   v4 U:A cWW       No Support T     99.4       0.1                   0.5 845 UA  
7919 7919 23S 74 2074 2435   v4 U:A cWW       No Support 3     99.1                           0.9 437 UA  
7920 7920 23S 74 2074 2435   v4 U:A cWW       No Support B     98.3                           1.7 241 UA  
7921 7921 23S 74 2074 2435   v4 U:A cWW       No Support A     100.0                             41 UA  
7922 7922 23S 74 2074 2435   v4 U:A cWW       No Support C     100.0                             99 UA  
7923 7923 23S 74 2074 2435   v4 U:A cWW       No Support E     100.0                             155 UA  
7924 7924 23S 74 2074 2435   v4 U:A cWW       No Support M     99.7       0.3                     309 UA  
8828 8828 23S 90 2508 2580   v4 G:U cWW       No Support T         98.8                     1.2   778 GU  
8829 8829 23S 90 2508 2580   v4 G:U cWW       No Support 3         100.0                         418 GU  
8830 8830 23S 90 2508 2580   v4 G:U cWW       No Support B         100.0                         242 GU  
8831 8831 23S 90 2508 2580   v4 G:U cWW       No Support A         100.0                         41 GU  
8832 8832 23S 90 2508 2580   v4 G:U cWW       No Support C         100.0                         97 GU  
8833 8833 23S 90 2508 2580   v4 G:U cWW       No Support E         100.0                         135 GU  
8834 8834 23S 90 2508 2580   v4 G:U cWW       No Support M         96.6                     3.4   263 GU,UU  
9010 9010 23S 93 2591 2603   v4 C:G cWW       No Support T   99.5       0.1               0.1     0.2 734 CG  
9011 9011 23S 93 2591 2603   v4 C:G cWW       No Support 3   99.5                             0.4 417 CG  
9012 9012 23S 93 2591 2603   v4 C:G cWW       No Support B   100.0                               237 CG  
9013 9013 23S 93 2591 2603   v4 C:G cWW       No Support A   100.0                               41 CG  
9014 9014 23S 93 2591 2603   v4 C:G cWW       No Support C   100.0                               55 CG  
9015 9015 23S 93 2591 2603   v4 C:G cWW       No Support E   98.6                             1.4 139 CG  
9016 9016 23S 93 2591 2603   v4 C:G cWW       No Support M   99.2       0.4               0.4       262 CG  
9549 9549 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support T 20.7 2.6 2.6 20.2 17.8 2.8   0.2 5.2 0.5   0.9   1.2   23.2 2.1 426 GC,CG,UA,AU,GU,UG,AG,UU GC,AG,CA,UU
9550 9550 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support 3 21.5 3.3   16.0 19.0 3.0     6.6 0.3   0.6   0.3   29.0 0.3 331 GC,CG,AU,GU,UG,AG,UU GC,AG,CA,UU
9551 9551 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support B 6.3 3.9   3.4 29.3       10.7     0.5       45.9   205 GC,CG,AU,GU,AG,UU GC,AG,UU
9552 9552 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support A 100.0                                 38 GC  
9553 9553 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support C 30.0   4.0 42.0 16.0 2.0   2.0       4.0           50 GC,UA,AU,GU,UG,AC,CU GC,UA,AU
9554 9554 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support E 22.7 3.4   52.3 3.4 11.4       1.1   1.1   1.1   2.3 1.1 88 GC,CG,AU,GU,UG,UU GC,AU,UG,CA
9555 9555 23S 101 2845 2871   v4 U:U cWW   3°: base pair   No Support M 4.4   20.0 26.7 11.1 2.2       2.2       8.9   6.7 17.8 45 GC,UA,AU,GU,UG,CA,GG,UU UA,AU,GG

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");