crw2: basepair_frequency: 14 rows where conformation = "No BP", molecule = "16S" and strength = "Strong" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

14 rows where conformation = "No BP", molecule = "16S" and strength = "Strong" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
1464	1464	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	T	0.1	7.6	7.8	0.1		52.0	0.9	0.2	0.1	0.5	10.5	0.5		0.1	15.3	0.3	3.9	6988	CG,UA,UG,CC,UC	UG,AA,CC
1465	1465	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	3	0.1	8.9	2.3			57.7		0.1		0.1	12.3	0.6			17.5	0.3		5946	CG,UA,UG,CC,UC	UG,CC
1466	1466	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	B	0.1	11.2	2.6			68.4		0.1		0.2	15.6	0.8			0.6	0.3		4697	CG,UA,UG,CC	UG,CC
1467	1467	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	A			1.8			94.9									3.2			217	UG,UC
1468	1468	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	C		0.6	3.0	1.2		73.8		0.6	0.6		1.8			1.2	15.9	1.2		164	UA,UG,UC	AU,UG,CC
1469	1469	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	E	0.3		0.9			1.2		0.2							97.4		0.1	1032	UC
1470	1470	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	M	0.1	0.3	45.6	0.7	0.2	9.1	7.2	1.1	0.7	3.2	0.1			0.1	0.5	0.1	31.0	886	UA,UG,AA,CA	CG,UA,GU,AC
2689	2689	16S	34	1064	1192	v4	G:C	No BP		Strong	T	73.2		2.5	0.4	1.8	0.2	0.2	0.1	0.1	0.7	0.1	12.9	2.5	0.5	4.2	0.4	0.1	6914	GC,UA,CU,GA,UC	GC,UA,AG,CU
2690	2690	16S	34	1064	1192	v4	G:C	No BP		Strong	3	79.8		0.4		1.8	0.2		0.1	0.1			15.9	0.1	0.4	0.8	0.2	0.1	5606	GC,CU	GC,UA,AG,CU
2691	2691	16S	34	1064	1192	v4	G:C	No BP		Strong	B	97.1				2.1			0.1					0.1	0.6				4404	GC,GU
2692	2692	16S	34	1064	1192	v4	G:C	No BP		Strong	A	100.0																	198	GC
2693	2693	16S	34	1064	1192	v4	G:C	No BP		Strong	C	89.6				6.1		0.6							3.7				163	GC,GU,GG	GC,AA
2694	2694	16S	34	1064	1192	v4	G:C	No BP		Strong	E		0.1	2.2		1.0	1.3			0.3	0.1	0.1	89.3			4.3	1.1	0.2	1000	UA,CU,UC	AG,CU,UC
2695	2695	16S	34	1064	1192	v4	G:C	No BP		Strong	M	38.0	0.1	12.9	3.0	1.0		1.0	0.2	0.3	3.9	0.7		15.0	0.3	21.7	1.6	0.5	1150	GC,UA,AU,CA,GA,UC	GC,CG,UA,AU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

14 rows where conformation = "No BP", molecule = "16S" and strength = "Strong" sorted by position_1

Advanced export