Base-pair frequencies
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- header_format
- legacy = entry not yet revised to the v4 layout (no type / conformation).
15 rows where conformation = "No BP", group_code = "T" and strength = "Weak" sorted by position_1
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Suggested facets: helix_number, reference_base_pair, CG, UA, AU, GU, AA, AC, AG, CA, CU, GA, GG, UC, UU, gap, Seq, predominant_types, covarying_types
strength 1
- Weak · 15 ✖
header_format 1
- v4 15
group_code 1
- T · 15 ✖
conformation 1
- No BP · 15 ✖
tertiary_type 0
| Link | rowid | molecule | helix_number | position_1 ▼ | position_2 | pair_note | header_format | reference_base_pair | conformation | ai_code | tertiary_type | header_extra | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | Seq | predominant_types | covarying_types |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197 | 197 | 16S | 1 | 13 | 21 | v4 | U:G | No BP | Weak | T | 0.1 | 8.8 | 0.1 | 88.5 | 0.1 | 1.5 | 0.1 | 0.1 | 0.1 | 0.3 | 0.5 | 3890 | UA,UG | UG,AA | ||||||||||
| 1079 | 1079 | 16S | 15 | 375 | 388 | v4 | U:G | No BP | Weak | T | 0.1 | 0.9 | 97.8 | 0.1 | 0.1 | 0.1 | 0.4 | 0.4 | 6852 | UG | ||||||||||||||
| 1611 | 1611 | 16S | 21 | 606 | 632 | v4 | G:U | No BP | Weak | T | 1.7 | 1.7 | 1.4 | 1.7 | 47.5 | 1.7 | 0.4 | 0.1 | 0.4 | 0.3 | 0.3 | 2.0 | 8.1 | 1.4 | 2.4 | 28.8 | 7251 | GU,GA,GG,UU | GU,UG,AA,CC | |||||
| 4992 | 4992 | 23S | 33 | 687 | 775 | v4 | C:G | No BP | Weak | T | 95.8 | 0.2 | 0.9 | 1.2 | 0.1 | 0.3 | 0.1 | 0.1 | 0.3 | 0.1 | 0.3 | 0.3 | 886 | CG | CG,UA,AU | |||||||||
| 5097 | 5097 | 23S | 34 | 703 | 729 | v4 | U:G | No BP | Weak | T | 15.1 | 0.1 | 0.1 | 0.1 | 71.4 | 0.2 | 5.1 | 0.1 | 0.1 | 0.6 | 7.1 | 887 | CG,UG,AG | GU,UG,AA | ||||||||||
| 2381 | 2381 | 16S | 31 | 960 | 975 | v4 | U:A | No BP | Weak | T | 61.8 | 14.8 | 22.4 | 0.2 | 0.1 | 0.2 | 0.2 | 0.3 | 6871 | UA,AU,UG | UA,AU | |||||||||||||
| 2388 | 2388 | 16S | 31 | 961 | 974 | v4 | U:A | No BP | Weak | T | 0.1 | 0.1 | 66.4 | 0.1 | 0.1 | 16.8 | 0.3 | 0.6 | 0.2 | 2.1 | 8.7 | 4.1 | 0.3 | 6856 | UA,UG,CU,UC,UU | GC,UA,CU | ||||||||
| 2626 | 2626 | 16S | 34 | 1053 | 1205 | v4 | G:U | No BP | Weak | T | 2.6 | 15.1 | 81.7 | 0.1 | 0.1 | 0.3 | 6891 | GC,AU,GU | GU,AC | |||||||||||||||
| 2899 | 2899 | 16S | 40 | 1158 | 1178 | v4 | C:G | No BP | Weak | T | 81.2 | 0.4 | 0.1 | 0.5 | 0.1 | 1.8 | 0.2 | 0.1 | 0.2 | 0.1 | 15.2 | 7138 | CG | CG,UA,AU | ||||||||||
| 2906 | 2906 | 16S | 40 | 1159 | 1177 | v4 | U:G | No BP | Weak | T | 5.5 | 0.2 | 0.1 | 73.5 | 1.5 | 0.3 | 1.5 | 0.4 | 0.4 | 0.1 | 0.1 | 0.8 | 0.4 | 15.2 | 7135 | CG,UG | UG,AA,CC | |||||||
| 3445 | 3445 | 16S | 45 | 1506 | 1529 | v4 | U:G | No BP | Weak | T | 0.6 | 4.6 | 93.0 | 0.2 | 0.5 | 0.4 | 0.7 | 2260 | UA,UG | |||||||||||||||
| 7393 | 7393 | 23S | 66 | 1799 | 1820 | v4 | G:U | No BP | Weak | T | 22.1 | 0.1 | 0.6 | 73.2 | 0.1 | 0.4 | 3.5 | 842 | GC,GU | UA,GU,AC | ||||||||||||||
| 7666 | 7666 | 23S | 69 | 1911 | 1919 | v4 | U:A | No BP | Weak | T | 97.9 | 0.5 | 0.1 | 1.5 | 852 | UA | ||||||||||||||||||
| 7925 | 7925 | 23S | 74 | 2075 | 2434 | v4 | U:A | No BP | Weak | T | 0.1 | 97.8 | 0.4 | 0.2 | 0.1 | 0.2 | 1.2 | 845 | UA | CG,UA | ||||||||||||||
| 8359 | 8359 | 23S | 80 | 2249 | 2255 | v4 | U:G | No BP | Weak | T | 4.1 | 94.6 | 0.6 | 0.4 | 0.1 | 0.1 | 0.1 | 845 | UA,UG | UG,CA |
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CREATE TABLE "basepair_frequency" (
"molecule" TEXT,
"helix_number" TEXT,
"position_1" INTEGER,
"position_2" INTEGER,
"pair_note" TEXT,
"header_format" TEXT,
"reference_base_pair" TEXT,
"conformation" TEXT,
"ai_code" TEXT,
"tertiary_type" TEXT,
"header_extra" TEXT,
"strength" TEXT,
"group_code" TEXT,
"GC" REAL,
"CG" REAL,
"UA" REAL,
"AU" REAL,
"GU" REAL,
"UG" REAL,
"AA" REAL,
"AC" REAL,
"AG" REAL,
"CA" REAL,
"CC" REAL,
"CU" REAL,
"GA" REAL,
"GG" REAL,
"UC" REAL,
"UU" REAL,
"gap" REAL,
"Seq" INTEGER,
"predominant_types" TEXT,
"covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
ON "basepair_frequency" ("molecule", "position_1", "position_2");