crw2: basepair_frequency: 12 rows where conformation = "No BP", group_code = "T" and strength = "Strong" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

12 rows where conformation = "No BP", group_code = "T" and strength = "Strong" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
1464	1464	16S	20	582	758	v4	C:C	No BP	3°: base pair	Strong	T	0.1	7.6	7.8	0.1		52.0	0.9	0.2	0.1	0.5	10.5	0.5		0.1	15.3	0.3	3.9	6988	CG,UA,UG,CC,UC	UG,AA,CC
2689	2689	16S	34	1064	1192	v4	G:C	No BP		Strong	T	73.2		2.5	0.4	1.8	0.2	0.2	0.1	0.1	0.7	0.1	12.9	2.5	0.5	4.2	0.4	0.1	6914	GC,UA,CU,GA,UC	GC,UA,AG,CU
6602	6602	23S	55	1420	1578	v4	A:U	No BP		Strong	T	4.5	10.9	5.9	7.0	0.8	0.2	0.1	0.2	0.6	0.2		0.8				22.3	46.3	860	GC,CG,UA,AU,UU	GC,CG,AA,UU
6910	6910	23S	59	1527	1544	v4	G:A	No BP	3°: base pair	Strong	T	1.9	18.8	3.7	1.6	7.7	0.3	1.0		0.2	2.8	0.2	0.1	20.0	0.2	0.1	0.3	40.8	861	CG,UA,GU,CA,GA	CG,AU,GA,UC
7680	7680	23S	71	1935	1962	v4	G:C	No BP		Strong	T	51.6	20.5		16.5	5.7	0.2	0.2	2.6	1.1				0.2	0.7	0.2	0.4		847	GC,CG,AU,GU,AC	GC,CG,AU
8135	8135	23S	76.1	2112	2169	v4	G:A	No BP	3°: pseudoknot	Strong	T	0.1	0.2	0.9	1.1	0.5		1.3		11.0	0.1			53.0		0.1		31.6	847	AG,GA	AG,GA,UC
8142	8142	23S	76.1	2113	2170	v4	U:A	No BP	3°: pseudoknot	Strong	T		26.0	37.7			1.1	0.1			1.8			1.3			0.1	32.0	847	CG,UA	CG,UA
8149	8149	23S	76.1	2117	2172	v4	A:U	No BP	3°: pseudoknot	Strong	T	5.4	7.7	0.6	49.2	0.4		0.7		0.5	0.4		0.2	0.8			2.5	31.6	847	GC,CG,AU,UU	GC,CG,UA,AU
8478	8478	23S	84	2296	2322	v4	U:A	No BP		Strong	T		0.4	63.4	0.1		0.2	0.1	0.1		0.1	0.1		0.5		2.7	0.5	31.7	848	UA,UC	CG,UA,AU
9094	9094	23S	94	2637	2781	v4	U:A	No BP		Strong	T	0.9	11.6	51.8	1.7		0.8	0.8	0.2	0.3	1.1	0.6	0.2	0.8		0.8	0.5	28.3	662	CG,UA	GC,CG,UA,AU
9409	9409	23S	98	2796	2800	v4	U:A	No BP		Strong	T	1.7	0.6	4.2	0.6		0.4				0.9						0.1	91.4	693	UA	GC,CG,UA,AU
9563	9563	23S	101	2849	2866	v4	U:U	No BP	3°: base pair	Strong	T			0.7		1.8	3.8		0.4	0.2	0.2		0.9	0.4	26.2	1.1	57.5	6.7	447	UG,GG,UU	AC,CA,GG,UU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

12 rows where conformation = "No BP", group_code = "T" and strength = "Strong" sorted by position_1

Advanced export