crw2: basepair_frequency: 19 rows where conformation = "No BP", group_code = "M" and molecule = "23S" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

19 rows where conformation = "No BP", group_code = "M" and molecule = "23S" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
4998	4998	23S	33	687	775	v4	C:G	No BP		Weak	M		89.7	0.8	3.1		4.2		0.4	0.4				0.4	0.4			0.8	262	CG,AU,UG	CG,UA,AU
5005	5005	23S	33	688	774	v4	U:G	No BP		Significant	M			90.1	5.0	0.4	1.5				0.4					1.1	0.8	0.8	262	UA,AU	UA,AU
5103	5103	23S	34	703	729	v4	U:G	No BP		Weak	M		6.1	0.4	0.4	0.4	48.7	0.8		17.1			0.4		1.9			24.0	263	CG,UG,AG	GU,UG,AA
6608	6608	23S	55	1420	1578	v4	A:U	No BP		Strong	M		1.1	1.4	2.2					0.4								94.9	276	AU	CG,UA,AU
6916	6916	23S	59	1527	1544	v4	G:A	No BP	3°: base pair	Strong	M				0.4													99.7	276
7399	7399	23S	66	1799	1820	v4	G:U	No BP		Weak	M	0.7		0.4	1.8	89.0												8.1	283	GU	UA,GU
7672	7672	23S	69	1911	1919	v4	U:A	No BP		Weak	M			96.1														3.8	311	UA
7686	7686	23S	71	1935	1962	v4	G:C	No BP		Strong	M	29.4			45.2	11.9		0.6	6.1	2.9				0.6	1.6	0.6	1.0		310	GC,AU,GU,AC,AG	GC,AU
7931	7931	23S	74	2075	2434	v4	U:A	No BP		Weak	M		0.3	94.8			1.0	0.6					0.3			0.6	2.3		309	UA,UU	CG,UA
8141	8141	23S	76.1	2112	2169	v4	G:A	No BP	3°: pseudoknot	Strong	M		0.6	2.6				2.6		1.6	0.3			5.2		0.3		86.7	309	UA,AA,GA	AG,GA,UC
8148	8148	23S	76.1	2113	2170	v4	U:A	No BP	3°: pseudoknot	Strong	M		1.0	7.8			1.6	0.3			1.0			0.6				87.7	309	UA	CG,UA
8155	8155	23S	76.1	2117	2172	v4	A:U	No BP	3°: pseudoknot	Strong	M	1.6		1.6	5.5	0.3		1.9		1.3				1.0				86.7	309	AU	GC,UA,AU
8365	8365	23S	80	2249	2255	v4	U:G	No BP		Weak	M			10.7			87.1				1.6					0.3	0.3		309	UA,UG	UG,CA
8484	8484	23S	84	2296	2322	v4	U:A	No BP		Strong	M		1.0	10.0	0.3		0.6	0.3				0.3				0.3	0.3	86.7	309	UA	CG,UA,AU
8855	8855	23S	90	2511	2577	v4	U:A	No BP		No Support	M			97.3							2.7								263	UA,CA
9100	9100	23S	94	2637	2781	v4	U:A	No BP		Strong	M	0.9		7.9	3.5		0.4	1.8		0.9				1.8			0.4	82.3	227	UA,AU	GC,UA,AU
9415	9415	23S	98	2796	2800	v4	U:A	No BP		Strong	M																	100.0	219
9422	9422	23S	99	2808	2891	v4	G:U	No BP	3°: base pair	???	M			4.5	2.3			13.6	2.3	4.5							2.3	70.4	44	UA,AU,AA,AC,AG,UU	AA,UU
9569	9569	23S	101	2849	2866	v4	U:U	No BP	3°: base pair	Strong	M			4.4			6.7		4.4				2.2			8.9	31.1	42.2	45	UA,UG,AC,CU,UC,UU	AC,UU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

19 rows where conformation = "No BP", group_code = "M" and molecule = "23S" sorted by position_1

Advanced export