crw2: basepair_frequency: 19 rows where conformation = "No BP", group_code = "E" and molecule = "23S" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

19 rows where conformation = "No BP", group_code = "E" and molecule = "23S" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
4997	4997	23S	33	687	775	v4	C:G	No BP		Weak	E		98.5												1.0			0.5	205	CG
5004	5004	23S	33	688	774	v4	U:G	No BP		Significant	E			88.8			1.0									9.8	0.5		205	UA,UC
5102	5102	23S	34	703	729	v4	U:G	No BP		Weak	E		49.3				50.2				0.5								205	CG,UG	UG,CA
6607	6607	23S	55	1420	1578	v4	A:U	No BP		Strong	E	12.8	50.8	24.6	5.0	0.6			0.6		1.1							4.6	179	GC,CG,UA,AU	GC,CG,UA,AU
6915	6915	23S	59	1527	1544	v4	G:A	No BP	3°: base pair	Strong	E	2.8	67.8	4.4	0.6	15.6				0.6					0.6			7.8	180	GC,CG,UA,GU	CG,UA,GU
7398	7398	23S	66	1799	1820	v4	G:U	No BP		Weak	E	97.4				0.6			0.6									1.2	155	GC
7671	7671	23S	69	1911	1919	v4	U:A	No BP		Weak	E			99.4													0.6		155	UA
7685	7685	23S	71	1935	1962	v4	G:C	No BP		Strong	E		98.7				0.6		0.6										155	CG	CG,AC
7930	7930	23S	74	2075	2434	v4	U:A	No BP		Weak	E			98.1													1.9		155	UA
8140	8140	23S	76.1	2112	2169	v4	G:A	No BP	3°: pseudoknot	Strong	E	0.6			4.5	2.6								92.3					155	AU,GU,GA	AU,GA
8147	8147	23S	76.1	2113	2170	v4	U:A	No BP	3°: pseudoknot	Strong	E		4.5	91.6			2.6							0.6			0.6		155	CG,UA,UG	CG,UA
8154	8154	23S	76.1	2117	2172	v4	A:U	No BP	3°: pseudoknot	Strong	E	2.6			91.0	0.6					1.9		1.3	2.6					155	GC,AU,GA	GC,AU,CA
8364	8364	23S	80	2249	2255	v4	U:G	No BP		Weak	E						98.1								1.9				155	UG
8483	8483	23S	84	2296	2322	v4	U:A	No BP		Strong	E			85.2					0.6		0.6			2.6		10.3	0.6		155	UA,GA,UC	UA,AC
8854	8854	23S	90	2511	2577	v4	U:A	No BP		No Support	E			100.0															135	UA
9099	9099	23S	94	2637	2781	v4	U:A	No BP		Strong	E	1.6	68.0	12.8	1.6		3.2	0.8	0.8		1.6	3.2		0.8		4.0	1.6		125	CG,UA,UG,CC,UC	GC,CG,UA,AU
9414	9414	23S	98	2796	2800	v4	U:A	No BP		Strong	E																	100.0	126
9421	9421	23S	99	2808	2891	v4	G:U	No BP	3°: base pair	???	E		7.1		2.4	1.2	9.5			4.8				4.8			2.4	67.9	84	CG,AU,UG,AG,GA,UU	AU,UG,GA
9568	9568	23S	101	2849	2866	v4	U:U	No BP	3°: base pair	Strong	E						1.8				0.9		0.9		0.9	0.9	87.2	7.4	109	UU	CA,GG,UU

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CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

19 rows where conformation = "No BP", group_code = "E" and molecule = "23S" sorted by position_1

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