crw2: basepair_frequency: 19 rows where conformation = "No BP", group_code = 3 and molecule = "23S" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
header_format: legacy = entry not yet revised to the v4 layout (no type / conformation).

19 rows where conformation = "No BP", group_code = 3 and molecule = "23S" sorted by position_1

descending

Link	rowid	molecule	helix_number	position_1 ▼	position_2	header_format	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	Seq	predominant_types	covarying_types
4993	4993	23S	33	687	775	v4	C:G	No BP		Weak	3		99.0								0.2	0.2			0.4			0.2	524	CG
5000	5000	23S	33	688	774	v4	U:G	No BP		Significant	3			89.5			5.3									5.0	0.2		524	UA,UG,UC
5098	5098	23S	34	703	729	v4	U:G	No BP		Weak	3		22.5				77.3				0.2								524	CG,UG	UG,CA
6603	6603	23S	55	1420	1578	v4	A:U	No BP		Strong	3	8.1	18.8	9.1	10.5	1.0	0.4		0.2	0.8	0.4		1.2				39.5	9.8	484	GC,CG,UA,AU,UU	GC,CG,UU
6911	6911	23S	59	1527	1544	v4	G:A	No BP	3°: base pair	Strong	3	2.9	32.6	4.7	0.4	13.4		0.8		0.2				33.8	0.2		0.4	10.4	485	GC,CG,UA,GU,GA	CG,AU,GA
7394	7394	23S	66	1799	1820	v4	G:U	No BP		Weak	3	40.0				58.3			0.2									1.5	458	GC,GU	GU,AC
7667	7667	23S	69	1911	1919	v4	U:A	No BP		Weak	3			98.6							0.9						0.2	0.2	440	UA
7681	7681	23S	71	1935	1962	v4	G:C	No BP		Strong	3	56.9	39.9			2.5	0.5		0.2										436	GC,CG,GU	GC,CG
7926	7926	23S	74	2075	2434	v4	U:A	No BP		Weak	3			99.3													0.7		437	UA
8136	8136	23S	76.1	2112	2169	v4	G:A	No BP	3°: pseudoknot	Strong	3	0.2			2.1	0.9				20.1				76.7					437	AU,AG,GA	AG,GA
8143	8143	23S	76.1	2113	2170	v4	U:A	No BP	3°: pseudoknot	Strong	3		27.5	66.8			0.9				2.5			2.1			0.2		437	CG,UA,CA,GA	CG,UA
8150	8150	23S	76.1	2117	2172	v4	A:U	No BP	3°: pseudoknot	Strong	3	8.9			88.8	0.2					0.7		0.5	0.9					437	GC,AU	GC,AU,CA
8360	8360	23S	80	2249	2255	v4	U:G	No BP		Weak	3						99.1								0.7			0.2	434	UG
8479	8479	23S	84	2296	2322	v4	U:A	No BP		Strong	3			92.9					0.2		0.2			0.9		5.0	0.7		437	UA,UC	UA,AC
8850	8850	23S	90	2511	2577	v4	U:A	No BP		No Support	3			100.0															417	UA
9095	9095	23S	94	2637	2781	v4	U:A	No BP		Strong	3	1.1	20.3	71.0	0.8		1.1	0.3	0.3		1.8	1.1	0.3	0.3		1.3	0.5		379	CG,UA	GC,CG,UA,AU
9410	9410	23S	98	2796	2800	v4	U:A	No BP		Strong	3	3.1	1.0	7.0	1.0		0.8				1.6						0.3	85.2	384	GC,UA	GC,CG,UA,AU
9417	9417	23S	99	2808	2891	v4	G:U	No BP	3°: base pair	???	3	0.9	2.2	39.7	7.4	12.6	4.9	0.3		1.2	4.3			3.1			0.6	22.7	325	CG,UA,AU,GU,UG,CA,GA	CG,UA,GU
9564	9564	23S	101	2849	2866	v4	U:U	No BP	3°: base pair	Strong	3			0.3		2.0	2.6			0.3	0.3		0.9	0.6	30.4	0.3	59.4	3.2	352	GU,UG,GG,UU	CA,GG,UU

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JSON shape: default, array, newline-delimited

CREATE TABLE "basepair_frequency" (
   "molecule" TEXT,
   "helix_number" TEXT,
   "position_1" INTEGER,
   "position_2" INTEGER,
   "pair_note" TEXT,
   "header_format" TEXT,
   "reference_base_pair" TEXT,
   "conformation" TEXT,
   "ai_code" TEXT,
   "tertiary_type" TEXT,
   "header_extra" TEXT,
   "strength" TEXT,
   "group_code" TEXT,
   "GC" REAL,
   "CG" REAL,
   "UA" REAL,
   "AU" REAL,
   "GU" REAL,
   "UG" REAL,
   "AA" REAL,
   "AC" REAL,
   "AG" REAL,
   "CA" REAL,
   "CC" REAL,
   "CU" REAL,
   "GA" REAL,
   "GG" REAL,
   "UC" REAL,
   "UU" REAL,
   "gap" REAL,
   "Seq" INTEGER,
   "predominant_types" TEXT,
   "covarying_types" TEXT
);
CREATE INDEX "idx_basepair_frequency_molecule_position_1_position_2"
    ON "basepair_frequency" ("molecule", "position_1", "position_2");

Base-pair frequencies

19 rows where conformation = "No BP", group_code = 3 and molecule = "23S" sorted by position_1

Advanced export