Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

35 rows where strength = "Weak" and tertiary_type = "3°: base pair" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, CG, UA, AU, GU, UG, AA, AC, AG, CA, CU, GG, UC, UU, gap, sequences, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, DfDel, PNuc

group_code 7

molecule 2

conformation 2

tertiary_type 1

  • 3°: base pair · 35 ✖

strength 1

  • Weak · 35 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 6 68 101 G:A cWW 3°: base pair Weak T 3.1 0.3 13.9 0.7 0.3 0.3 0.2   0.1 0.2     68.8 0.4   0.2 11.6 6584 GC,UA,GA AU,UG,GA 39 50 15 0.34 0.05 0.0 0.05 0.2 0.21 0.52 0.9 0.01 0.68
16S 6 68 101 G:A cWW 3°: base pair Weak 3 3.4 0.3 16.3 0.7 0.2 0.3 0.2   0.1 0.3     77.1 0.4   0.2 0.6 5599 GC,UA,GA CG,AU,GA 27 32 7 0.24 0.04 0.0 0.04 0.21 0.21 1.18 1.55 0.0 0.78
16S 6 68 101 G:A cWW 3°: base pair Weak B 0.7   0.1   0.2 0.3 0.2     0.3     97.0 0.5     0.6 4427 GA UG,GA 15 18 1 0.06 0.13 0.0 0.13 0.01 0.01 1.86 1.76 0.0 0.75
16S 6 68 101 G:A cWW 3°: base pair Weak A 78.9     6.0 0.5 1.0             11.6 0.5     1.5 199 GC,AU,GA GC,AU,UG 4 8 3 0.5 0.36 0.87 1.23 0.86 0.88 1.45 0.91 0.0 0.74
16S 6 68 101 G:A cWW 3°: base pair Weak C 1.8   2.4 0.6 0.6               92.7 1.8       164 UA,GA AU,GA 4 5 1 0.22 0.08 0.0 0.08 0.05 0.06 1.78 1.65 0.0 0.9
16S 6 68 101 G:A cWW 3°: base pair Weak E   1.5 93.1 2.6   0.3 0.2   0.2 0.2   0.1 0.2 0.1   1.3 0.1 973 UA,AU CG,UA,AU 8 6 3 0.43 0.61 0.97 1.58 0.97 0.98 1.63 1.6 0.0 0.92
16S 6 68 101 G:A cWW 3°: base pair Weak M 1.2   0.4 0.7 1.2       0.1       6.9 0.1   0.1 89.2 830 GA AU,GA 8 13 7 0.67 0.01 0.0 0.01 0.02 0.04 -0.33 -0.42 0.0 0.0
23S 25 538 555 A:G cWW 3°: base pair Weak T 11.9 0.6 0.3 3.7 6.4 3.1 2.7   43.4     0.1 0.1 0.2   1.4 26.1 881 GC,AU,GU,UG,AA,AG GC,AG,UU 16 29 6 0.27 0.43 0.77 1.2 0.22 0.35 -0.24 -0.4 0.0 0.62
23S 25 538 555 A:G cWW 3°: base pair Weak 3 20.0 1.0   4.0 10.3 5.1 0.6   52.2         0.4   2.3 4.2 525 GC,AU,GU,UG,AG,UU GC,AG,UU 14 17 3 0.19 0.51 0.78 1.29 0.26 0.42 0.42 0.46 0.01 0.8
23S 25 538 555 A:G cWW 3°: base pair Weak B         0.7   1.1   97.5         0.4     0.4 281 AG GU,AG 1 3 0 0.0 0.33 0.99 1.32 0.0 0.01 1.87 1.85 0.0 0.86
23S 25 538 555 A:G cWW 3°: base pair Weak A 70.3     5.4 24.3                         37 GC,AU,GU GC,AU 2 3 1 0.4 0.18 0.0 0.18 0.76 1.0 1.7 1.12 0.0 0.9
23S 25 538 555 A:G cWW 3°: base pair Weak C       1.0     5.0   94.0                 100 AA,AG   0 2 0 0.0 0.0 0.0 0.0 0.01 0.01 2.0 1.63 0.0 0.97
23S 25 538 555 A:G cWW 3°: base pair Weak E 38.2 2.4   9.2 20.8 13.0               0.5   5.8 10.1 207 GC,CG,AU,GU,UG,UU GC,AU,UG 11 11 2 0.18 0.43 0.67 1.1 0.55 0.93 0.13 0.14 0.02 0.71
23S 25 538 555 A:G cWW 3°: base pair Weak M     1.2 4.3 0.8   6.2   5.5     0.4 0.4       81.3 256 AU,AA,AG GU,AA 2 10 3 0.5 0.06 0.0 0.06 0.29 0.33 -0.47 -0.61 0.01 0.15
23S 66 1803 1814 A:G tHS 3°: base pair Weak T 0.5 0.4 0.6 1.5 20.2 0.1 7.6 2.6 37.5 0.2 0.1 0.1       0.2 28.2 840 GU,AA,AC,AG UA,GU,AG,CC 9 27 4 0.22 0.61 0.81 1.43 0.04 0.33 -0.16 -0.58 0.02 0.58
23S 66 1803 1814 A:G tHS 3°: base pair Weak 3 0.9 0.7 0.2 0.9 37.3   0.2 2.0 55.9   0.2         0.4 1.3 456 GU,AC,AG UA,GU,AG,CC 6 9 1 0.13 0.88 0.95 1.83 0.03 0.4 0.82 0.69 0.0 0.71
23S 66 1803 1814 A:G tHS 3°: base pair Weak B       0.4     0.4 0.4 98.5               0.4 259 AG   0 3 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.85 0.0 0.79
23S 66 1803 1814 A:G tHS 3°: base pair Weak A         75.6     17.1     2.4         4.9   41 GU,AC,CC,UU GU,AC 2 1 0 0.0 0.7 0.93 1.63 0.0 0.76 0.92 1.29 0.0 1.0
23S 66 1803 1814 A:G tHS 3°: base pair Weak C       4.0     53.5 11.9 29.7               1.0 101 AU,AA,AC,AG   0 10 0 0.0 0.0 0.0 0.0 0.04 0.04 2.0 0.36 0.01 0.97
23S 66 1803 1814 A:G tHS 3°: base pair Weak E 2.6 1.9 0.6 1.9 89.1     0.6                 3.2 156 GC,GU CG,UA,GU,AC 4 5 1 0.22 0.42 0.95 1.37 0.07 0.99 1.37 1.3 0.0 0.57
23S 66 1803 1814 A:G tHS 3°: base pair Weak M     1.4 1.8   0.4 3.2 0.4 10.6 0.7   0.4         81.3 283 AA,AG UA,AG,CU 3 8 3 0.55 0.22 0.66 0.88 0.17 0.19 -0.46 -0.57 0.06 0.17
23S 76 2109 2180 U:U cWW 3°: base pair Weak T 18.1   3.9 0.5 0.1 1.2 0.1     0.4   0.4     0.6 42.7 32.0 847 GC,UA,UU GC,CA,UU 13 12 4 0.32 0.73 0.9 1.63 0.33 0.35 -0.22 -0.41 0.0 0.55
23S 76 2109 2180 U:U cWW 3°: base pair Weak 3 34.1   5.0 0.2   2.3       0.7   0.2     0.9 56.3 0.2 437 GC,UA,UG,UU GC,CA,UU 3 5 1 0.25 0.8 0.91 1.71 0.39 0.42 0.96 0.65 0.0 0.69
23S 76 2109 2180 U:U cWW 3°: base pair Weak B                       0.4       99.6   241 UU   1 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.96 2.0 0.0 0.74
23S 76 2109 2180 U:U cWW 3°: base pair Weak A     53.7     14.6       7.3         9.8 14.6   41 UA,UG,CA,UC,UU   1 4 0 0.0 0.0 0.0 0.0 0.54 0.68 1.62 0.43 0.0 1.0
23S 76 2109 2180 U:U cWW 3°: base pair Weak C       1.0               1.0     1.0 97.0   101 UU   2 1 0 0.0 0.0 0.0 0.0 0.01 0.01 1.84 1.92 0.0 0.98
23S 76 2109 2180 U:U cWW 3°: base pair Weak E 96.1     0.6   2.6                     0.6 155 GC,UG GC,AU,UG 1 1 1 1.0 1.0 1.0 2.0 0.97 1.0 1.7 1.77 0.0 0.59
23S 76 2109 2180 U:U cWW 3°: base pair Weak M 1.3   3.6 0.6 0.3   0.3         0.3       5.8 87.6 309 UA,UU GC,AA,UU 8 6 3 0.43 0.25 0.6 0.85 0.45 0.47 -0.47 -0.47 0.01 0.12
23S 86 2351 2366 G:A cWW 3°: base pair Weak T 4.9 0.8 10.5 4.6 1.1 0.2 26.9 0.8 0.1 1.6   0.1 40.8 0.1 0.6 0.4 6.4 849 GC,UA,AU,AA,GA CG,AU,GA,UC 59 28 12 0.28 0.11 0.0 0.11 0.22 0.24 0.14 0.78 0.01 0.76
23S 86 2351 2366 G:A cWW 3°: base pair Weak 3 9.6 1.4 1.8 5.5 2.1 0.5 7.1   0.2       71.5 0.2     0.2 438 GC,AU,GU,AA,GA CG,AU,GA 16 16 7 0.44 0.24 0.79 1.03 0.18 0.21 1.2 0.99 0.0 0.69
23S 86 2351 2366 G:A cWW 3°: base pair Weak B 0.8       0.8   12.8   0.4       84.3 0.4     0.4 242 AA,GA AG,GA 7 4 1 0.18 0.03 0.0 0.03 0.01 0.02 1.44 1.75 0.0 0.74
23S 86 2351 2366 G:A cWW 3°: base pair Weak A 36.6   4.9 48.8 9.8                         41 GC,UA,AU,GU GC,UA,AU 4 4 2 0.5 0.81 0.9 1.71 0.9 1.0 0.77 0.8 0.0 1.0
23S 86 2351 2366 G:A cWW 3°: base pair Weak C             83.3           16.7         102 AA,GA   8 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.35 2.0 0.0 0.99
23S 86 2351 2366 G:A cWW 3°: base pair Weak E 16.1 3.9 3.9 2.6 1.9 1.3             70.3         155 GC,CG,UA,AU,GA CG,AU,GA 5 8 4 0.61 0.22 0.77 0.98 0.27 0.3 1.3 0.83 0.0 0.59
23S 86 2351 2366 G:A cWW 3°: base pair Weak M   0.3 26.2 4.9     36.2 2.3   4.5   0.3 5.2   1.6 1.0 17.4 309 UA,AU,AA,AC,CA,GA AA,CU,UC 35 12 5 0.21 0.04 0.0 0.04 0.38 0.38 -0.14 0.42 0.04 0.82

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;