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Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

14 rows where strength = "No Support" and tertiary_type = "3°: base pair" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, GC, AC, GG, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel

group_code 7

  • 3 2
  • A 2
  • B 2
  • C 2
  • E 2
  • M 2
  • T 2

molecule 2

  • 16S 7
  • 23S 7

tertiary_type 1

  • 3°: base pair · 14 ✖

strength 1

  • No Support · 14 ✖

conformation 1

  • cWW 14
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 34 1061 1195 G:C cWW 3°: base pair No Support T 91.4     6.3 1.9                 0.1     0.2 6774 GC,AU GC,AU 7 21 2 0.14 0.74 0.98 1.72 0.98 1.0 1.64 1.56 0.0 0.79
16S 34 1061 1195 G:C cWW 3°: base pair No Support 3 97.0     0.3 2.3           0.1     0.1     0.1 5466 GC,GU GC,AU 2 16 1 0.11 0.1 0.0 0.1 0.97 1.0 1.95 1.79 0.0 0.76
16S 34 1061 1195 G:C cWW 3°: base pair No Support B 99.4       0.4                 0.1       4267 GC   1 11 0 0.0 0.0 0.0 0.0 0.99 1.0 1.98 1.94 0.0 0.73
16S 34 1061 1195 G:C cWW 3°: base pair No Support A 36.0     7.6 55.8                       0.5 197 GC,AU,GU   1 2 1 0.67 0.0 0.0 0.0 0.44 1.0 1.62 1.01 0.0 0.74
16S 34 1061 1195 G:C cWW 3°: base pair No Support C 100.0                                 162 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.94 0.01 0.89
16S 34 1061 1195 G:C cWW 3°: base pair No Support E 99.3       0.2           0.2     0.1     0.2 998 GC   0 3 0 0.0 0.0 0.0 0.0 0.99 1.0 1.97 1.96 0.0 0.94
16S 34 1061 1195 G:C cWW 3°: base pair No Support M 63.7     35.5 0.3     0.2           0.1 0.1   0.2 1151 GC,AU GC,AU 5 5 1 0.2 0.98 0.99 1.98 0.99 1.0 1.03 1.04 0.0 0.99
23S 101 2845 2871 U:U cWW 3°: base pair No Support T 20.7 2.6 2.6 20.2 17.8 2.8   0.2 5.2 0.5   0.9   1.2   23.2 2.1 426 GC,CG,UA,AU,GU,UG,AG,UU GC,AG,CA,UU 34 30 13 0.41 0.35 0.51 0.86 0.47 0.68 0.09 0.44 0.0 0.4
23S 101 2845 2871 U:U cWW 3°: base pair No Support 3 21.5 3.3   16.0 19.0 3.0     6.6 0.3   0.6   0.3   29.0 0.3 331 GC,CG,AU,GU,UG,AG,UU GC,AG,CA,UU 21 19 10 0.5 0.4 0.58 0.98 0.41 0.63 0.19 0.71 0.01 0.52
23S 101 2845 2871 U:U cWW 3°: base pair No Support B 6.3 3.9   3.4 29.3       10.7     0.5       45.9   205 GC,CG,AU,GU,AG,UU GC,AG,UU 15 12 7 0.52 0.32 0.63 0.94 0.14 0.43 0.36 1.07 0.0 0.63
23S 101 2845 2871 U:U cWW 3°: base pair No Support A 100.0                                 38 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.93
23S 101 2845 2871 U:U cWW 3°: base pair No Support C 30.0   4.0 42.0 16.0 2.0   2.0       4.0           50 GC,UA,AU,GU,UG,AC,CU GC,UA,AU 4 3 0 0.0 0.59 0.76 1.35 0.76 0.94 0.53 0.75 0.0 0.48
23S 101 2845 2871 U:U cWW 3°: base pair No Support E 22.7 3.4   52.3 3.4 11.4       1.1   1.1   1.1   2.3 1.1 88 GC,CG,AU,GU,UG,UU GC,AU,UG,CA 6 7 3 0.46 0.76 0.89 1.64 0.79 0.94 0.32 0.58 0.01 0.33
23S 101 2845 2871 U:U cWW 3°: base pair No Support M 4.4   20.0 26.7 11.1 2.2       2.2       8.9   6.7 17.8 45 GC,UA,AU,GU,UG,CA,GG,UU UA,AU,GG 9 8 3 0.35 0.52 0.68 1.2 0.62 0.78 -0.43 -0.35 0.0 0.12

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;
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