Base-pair statistics (frequencies and scores together) (view)
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- sequences
- Number of sequences in the group.
14 rows where strength = "No Support" and tertiary_type = "3°: base pair" sorted by position_1
This data as json, CSV (advanced)
Suggested facets: helix_number, position_1, position_2, reference_base_pair, GC, AC, GG, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel
| molecule | helix_number | position_1 ▼ | position_2 | reference_base_pair | conformation | tertiary_type | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | sequences | predominant_types | covarying_types | Xch | Ych | PE | PES | Cov1 | Cov3 | C1_C3 | WC | WCGU | XCons | YCons | DfDel | PNuc |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | T | 91.4 | 6.3 | 1.9 | 0.1 | 0.2 | 6774 | GC,AU | GC,AU | 7 | 21 | 2 | 0.14 | 0.74 | 0.98 | 1.72 | 0.98 | 1.0 | 1.64 | 1.56 | 0.0 | 0.79 | ||||||||||||
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | 3 | 97.0 | 0.3 | 2.3 | 0.1 | 0.1 | 0.1 | 5466 | GC,GU | GC,AU | 2 | 16 | 1 | 0.11 | 0.1 | 0.0 | 0.1 | 0.97 | 1.0 | 1.95 | 1.79 | 0.0 | 0.76 | |||||||||||
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | B | 99.4 | 0.4 | 0.1 | 4267 | GC | 1 | 11 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 1.0 | 1.98 | 1.94 | 0.0 | 0.73 | |||||||||||||||
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | A | 36.0 | 7.6 | 55.8 | 0.5 | 197 | GC,AU,GU | 1 | 2 | 1 | 0.67 | 0.0 | 0.0 | 0.0 | 0.44 | 1.0 | 1.62 | 1.01 | 0.0 | 0.74 | ||||||||||||||
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | C | 100.0 | 162 | GC | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 2.0 | 1.94 | 0.01 | 0.89 | |||||||||||||||||
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | E | 99.3 | 0.2 | 0.2 | 0.1 | 0.2 | 998 | GC | 0 | 3 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 1.0 | 1.97 | 1.96 | 0.0 | 0.94 | |||||||||||||
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | M | 63.7 | 35.5 | 0.3 | 0.2 | 0.1 | 0.1 | 0.2 | 1151 | GC,AU | GC,AU | 5 | 5 | 1 | 0.2 | 0.98 | 0.99 | 1.98 | 0.99 | 1.0 | 1.03 | 1.04 | 0.0 | 0.99 | ||||||||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | T | 20.7 | 2.6 | 2.6 | 20.2 | 17.8 | 2.8 | 0.2 | 5.2 | 0.5 | 0.9 | 1.2 | 23.2 | 2.1 | 426 | GC,CG,UA,AU,GU,UG,AG,UU | GC,AG,CA,UU | 34 | 30 | 13 | 0.41 | 0.35 | 0.51 | 0.86 | 0.47 | 0.68 | 0.09 | 0.44 | 0.0 | 0.4 | ||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | 3 | 21.5 | 3.3 | 16.0 | 19.0 | 3.0 | 6.6 | 0.3 | 0.6 | 0.3 | 29.0 | 0.3 | 331 | GC,CG,AU,GU,UG,AG,UU | GC,AG,CA,UU | 21 | 19 | 10 | 0.5 | 0.4 | 0.58 | 0.98 | 0.41 | 0.63 | 0.19 | 0.71 | 0.01 | 0.52 | ||||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | B | 6.3 | 3.9 | 3.4 | 29.3 | 10.7 | 0.5 | 45.9 | 205 | GC,CG,AU,GU,AG,UU | GC,AG,UU | 15 | 12 | 7 | 0.52 | 0.32 | 0.63 | 0.94 | 0.14 | 0.43 | 0.36 | 1.07 | 0.0 | 0.63 | ||||||||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | A | 100.0 | 38 | GC | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 2.0 | 2.0 | 0.0 | 0.93 | |||||||||||||||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | C | 30.0 | 4.0 | 42.0 | 16.0 | 2.0 | 2.0 | 4.0 | 50 | GC,UA,AU,GU,UG,AC,CU | GC,UA,AU | 4 | 3 | 0 | 0.0 | 0.59 | 0.76 | 1.35 | 0.76 | 0.94 | 0.53 | 0.75 | 0.0 | 0.48 | ||||||||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | E | 22.7 | 3.4 | 52.3 | 3.4 | 11.4 | 1.1 | 1.1 | 1.1 | 2.3 | 1.1 | 88 | GC,CG,AU,GU,UG,UU | GC,AU,UG,CA | 6 | 7 | 3 | 0.46 | 0.76 | 0.89 | 1.64 | 0.79 | 0.94 | 0.32 | 0.58 | 0.01 | 0.33 | |||||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | M | 4.4 | 20.0 | 26.7 | 11.1 | 2.2 | 2.2 | 8.9 | 6.7 | 17.8 | 45 | GC,UA,AU,GU,UG,CA,GG,UU | UA,AU,GG | 9 | 8 | 3 | 0.35 | 0.52 | 0.68 | 1.2 | 0.62 | 0.78 | -0.43 | -0.35 | 0.0 | 0.12 |
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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
f.predominant_types, f.covarying_types,
s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
on s.molecule = f.molecule and s.position_1 = f.position_1
and s.position_2 = f.position_2 and s.group_code = f.group_code;