Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

47 rows where group_code = "C", molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, GC, CG, UA, AU, GU, UG, AA, AC, AG, CA, CC, CU, GA, GG, UC, UU, gap, sequences, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

conformation 4

tertiary_type 2

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 1 13 21 U:G No BP   Weak C     0.8     94.4                   4.8   126 UG,UU   0 2 0 0.0 0.0 0.0 0.0 0.01 0.95 2.0 1.66 0.0 0.69
16S 3 35 549 G:C cWW   Weak C 86.8       13.2                         136 GC,GU   0 6 0 0.0 0.0 0.0 0.0 0.87 1.0 2.0 1.43 0.0 0.75
16S 3 37 547 U:A tWS   Weak C     96.7       1.3     0.7     0.7       0.7 152 UA   3 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.79 1.94 0.01 0.83
16S 4 39 403 G:C cWW   Weak C 98.1     0.6 0.6                   0.6     154 GC GC,AU 1 3 1 0.5 0.33 0.99 1.32 0.99 0.99 1.89 1.81 0.0 0.85
16S 5 54 357 C:G cWW   Weak C   100.0                               158 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87
16S 5 56 356 U:A cWW   Weak C     100.0                             158 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87
16S 5 58 354 C:G cWW   Weak C   100.0                               158 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87
16S 6 62 105 U:G cWW   Weak C           99.4                     0.6 162 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.94 0.01 0.89
16S 6 68 101 G:A cWW 3°: base pair Weak C 1.8   2.4 0.6 0.6               92.7 1.8       164 UA,GA AU,GA 4 5 1 0.22 0.08 0.0 0.08 0.05 0.06 1.78 1.65 0.0 0.9
16S 12 292 308 G:C cWW   Weak C 99.4             0.6                   167 GC   1 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.92
16S 14 342 347 C:G cWW   Weak C   93.3 1.2     4.2     0.6             0.6   165 CG,UG CG,UA 7 3 1 0.2 0.18 0.0 0.18 0.94 0.99 1.62 1.85 0.0 0.91
16S 15 375 388 U:G No BP   Weak C     0.6     99.4                       164 UG   0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9
16S 16 406 436 G:C cWW   Weak C 98.1   0.6                   0.6     0.6   162 GC GC,UA 2 3 1 0.4 0.33 0.99 1.32 0.99 0.99 1.91 1.85 0.0 0.89
16S 16 416 427 G:U cWW   Weak C 41.1     6.7 44.2 0.6   1.8               4.9 0.6 163 GC,AU,GU,UU GU,UG,AC 11 7 3 0.33 0.04 0.0 0.04 0.48 0.93 1.2 0.96 0.01 0.89
16S 16 419 424 C:G cWW   Weak C   84.8 2.4 0.6   10.3       0.6 0.6           0.6 165 CG,UA,UG CG,UA,AU 10 7 4 0.47 0.21 0.88 1.09 0.88 0.99 1.33 1.63 0.0 0.9
16S 19.1 571 865 U:A cWW 3°: pseudoknot Weak C     98.8                         0.6 0.6 162 UA   0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.94 1.89 0.01 0.89
16S 20 584 757 G:U cWW   Weak C 0.6     0.6 98.8                         165 GU   1 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.95 1.95 0.0 0.91
16S 21 594 645 U:G cWW   Weak C 0.6 7.1 49.7 9.5   14.8 3.0 4.1   9.5         0.6 1.2   169 CG,UA,AU,UG,AA,AC,CA GC,CG,UA,AU 15 15 3 0.2 0.34 0.67 1.01 0.67 0.82 0.71 0.53 0.0 0.93
16S 21 597 643 G:C cWW   Weak C 91.8   1.8 3.5     0.6 1.8             0.6     170 GC,AU GC,UA,AU 3 4 2 0.57 0.64 0.97 1.61 0.97 0.97 1.52 1.62 0.0 0.93
16S 21 605 633 U:G cWW   Weak C     2.9 2.4   90.6 1.2   0.6 0.6           0.6 1.2 170 UA,AU,UG AU,UG,CA 2 3 0 0.0 0.36 0.95 1.3 0.05 0.97 1.64 1.42 0.01 0.92
16S 21 606 632 G:U No BP   Weak C 2.4 44.7 27.1 2.4 1.8 12.4 1.2   1.2     0.6     4.1 1.8 0.6 170 GC,CG,UA,AU,UG,UC GC,CG,UA,AU 15 15 5 0.33 0.58 0.77 1.35 0.77 0.91 0.52 0.46 0.0 0.93
16S 22 658 748 C:G cWW   Weak C 2.4 0.6 6.0 25.6 2.4 0.6 9.5 31.0 1.2     3.0 7.7 3.0   7.1   168 GC,UA,AU,GU,AA,AC,CU,GA,GG,UU CG,AC,GA,UU 14 19 4 0.24 0.22 0.46 0.69 0.34 0.38 0.64 0.23 0.0 0.92
16S 22 666 740 G:U cWW   Weak C       5.4 94.0                       0.6 167 AU,GU   3 0 0 0.0 0.0 0.0 0.0 0.05 1.0 1.65 1.94 0.01 0.91
16S 23 677 713 U:G cWW   Weak C   1.8 75.7     18.9     0.6 1.8           0.6 0.6 169 UA,UG CG,UA 4 14 2 0.22 0.07 0.0 0.07 0.78 0.97 1.73 1.14 0.01 0.92
16S 23 684 706 U:A cWW   Weak C     86.9 1.8 0.6   7.1         3.6           168 UA,AA,CU UA,CU 3 3 2 0.67 0.27 0.91 1.18 0.89 0.89 1.3 1.67 0.0 0.92
16S 23 690 697 G:U tSH   Weak C       10.1 88.8   0.6                   0.6 169 AU,GU GU,AA 3 1 0 0.0 0.06 0.0 0.06 0.1 0.99 1.45 1.95 0.01 0.92
16S 26 832 854 G:U cWW   Weak C 1.8 0.6   14.6 80.5 0.6           0.6       0.6 0.6 164 AU,GU CG,GU 9 3 2 0.33 0.03 0.0 0.03 0.17 0.99 1.17 1.72 0.01 0.9
16S 26.1 861 868 G:C cWW   Weak C 89.6     1.8       1.2     4.9       0.6   1.8 164 GC,CC GC,AU 8 2 2 0.4 0.21 0.93 1.15 0.93 0.93 1.3 1.87 0.02 0.89
16S 28 925 1391 G:U cWW   Weak C 0.6       99.4                         154 GU   0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.85
16S 28 935 1380 A:U cWW   Weak C       97.4 0.6   0.6   0.6               0.6 154 AU   1 2 0 0.0 0.0 0.0 0.0 0.98 0.99 1.95 1.82 0.01 0.84
16S 29 942 1341 G:U cWW   Weak C       1.9 91.2     1.9               1.2 3.8 160 GU GU,AC 5 1 1 0.33 0.38 0.97 1.34 0.02 0.97 1.38 1.87 0.03 0.85
16S 30 950 1231 U:G cWW   Weak C   1.9 1.9     95.0                     1.2 160 UG   2 3 0 0.0 0.0 0.0 0.0 0.04 1.0 1.87 1.75 0.01 0.87
16S 31 960 975 U:A No BP   Weak C     96.9                         3.1   162 UA,UU   0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.8 0.0 0.89
16S 31 961 974 U:A No BP   Weak C     96.9             2.5           0.6   163 UA,CA   1 1 0 0.0 0.0 0.0 0.0 0.97 0.97 1.83 1.95 0.0 0.9
16S 34 1052 1206 U:G cWW   Weak C           100.0                       163 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 1.95 0.0 0.9
16S 34 1053 1205 G:U No BP   Weak C 0.6       99.4                         163 GU   0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 2.0 1.95 0.0 0.9
16S 34 1058 1199 G:U cWW   Weak C         99.4                       0.6 161 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.93 2.0 0.01 0.88
16S 40 1158 1178 C:G No BP   Weak C   91.0   0.6   3.0 0.6   0.6     0.6         3.6 167 CG,UG CG,AU 0 2 0 0.0 0.11 0.0 0.11 0.95 0.98 1.38 1.71 0.03 0.89
16S 40 1159 1177 U:G No BP   Weak C   3.0 0.6 0.6   90.4     1.2 0.6       0.6   0.6 2.4 167 CG,UG AU,UG,CA 7 3 2 0.4 0.17 0.0 0.17 0.04 0.97 1.39 1.74 0.02 0.9
16S 41 1255 1282 G:C cWW   Weak C 81.5   4.2 5.4 4.8   3.0               0.6   0.6 168 GC,UA,AU,GU,AA GC,UA,AU 6 5 2 0.36 0.53 0.92 1.45 0.92 0.96 1.25 1.11 0.0 0.92
16S 44 1401 1501 G:C cWW   Weak C 100.0                                 142 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78
16S 44 1425 1475 U:G cWW   Weak C   50.7 26.0 2.0 0.7 15.3 0.7   0.7 2.0     0.7     0.7 0.7 150 CG,UA,AU,UG,CA CG,UA,AU 13 16 4 0.28 0.57 0.79 1.37 0.79 0.95 0.69 0.91 0.01 0.82
16S 44 1435 1466 G:C cWW   Weak C 74.3   3.3 6.6     5.9 6.6 0.7     0.7 1.3       0.7 152 GC,UA,AU,AA,AC GC,UA,AU 9 9 2 0.22 0.4 0.85 1.24 0.85 0.85 0.97 1.1 0.01 0.83
16S 44 1442 1460 G:C cWW   Weak C 8.4 58.4 14.3   0.6 1.9     0.6 1.3 0.6   2.6 0.6   1.9 8.3 154 GC,CG,UA,GA GC,CG,UA 0 14 0 0.0 0.69 0.89 1.57 0.89 0.92 0.32 0.23 0.01 0.78
16S 45 1506 1529 U:G No BP   Weak C           100.0                       108 UG   0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.59
16S 45 1511 1524 G:C cWW   Weak C 75.7 1.9     20.4             1.9           103 GC,GU GC,CG 2 7 1 0.22 0.08 0.0 0.08 0.78 0.98 1.76 1.06 0.0 0.57
16S 45 1512 1523 U:G cWW   Weak C           100.0                       114 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.63

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;