Base-pair statistics (frequencies and scores together) (view)
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- sequences
- Number of sequences in the group.
86 rows where group_code = "B" and tertiary_type = "3°: base pair" sorted by position_1
This data as json, CSV (advanced)
Suggested facets: reference_base_pair, AU, GU, UG, AA, AC, CA, CC, CU, GA, GG, UC, UU, gap, PE, Cov3, WCGU, DfDel, PNuc
strength 5
- Strong 72
- Weak 5
- ??? 4
- Significant 3
- No Support 2
tertiary_type 1
- 3°: base pair · 86 ✖
group_code 1
- B · 86 ✖
| molecule | helix_number | position_1 ▼ | position_2 | reference_base_pair | conformation | tertiary_type | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | sequences | predominant_types | covarying_types | Xch | Ych | PE | PES | Cov1 | Cov3 | C1_C3 | WC | WCGU | XCons | YCons | DfDel | PNuc |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23S | 2 | 30 | 510 | G:C | cWW | 3°: base pair | Strong | B | 97.6 | 1.2 | 1.2 | 250 | GC | GC,AA | 1 | 3 | 0 | 0.0 | 0.5 | 0.99 | 1.49 | 0.98 | 0.99 | 1.91 | 1.81 | 0.0 | 0.77 | ||||||||||||||
| 16S | 5 | 47 | 361 | C:G | cWW | 3°: base pair | Strong | B | 92.6 | 3.9 | 0.5 | 1.6 | 0.7 | 0.3 | 4038 | CG,UA | CG,UA | 6 | 3 | 3 | 0.67 | 0.57 | 0.97 | 1.54 | 0.97 | 0.97 | 1.55 | 1.67 | 0.0 | 0.69 | |||||||||||
| 23S | 5 | 53 | 117 | A:G | tHS | 3°: base pair | Significant | B | 100.0 | 252 | AG | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 2.0 | 0.0 | 0.77 | |||||||||||||||||
| 16S | 6 | 68 | 101 | G:A | cWW | 3°: base pair | Weak | B | 0.7 | 0.1 | 0.2 | 0.3 | 0.2 | 0.3 | 97.0 | 0.5 | 0.6 | 4427 | GA | UG,GA | 15 | 18 | 1 | 0.06 | 0.13 | 0.0 | 0.13 | 0.01 | 0.01 | 1.86 | 1.76 | 0.0 | 0.75 | ||||||||
| 5S | 3 | 75 | 101 | 3°: base pair | Strong | B | 2.6 | 0.3 | 3.0 | 0.3 | 5.0 | 0.3 | 88.1 | 0.3 | 302 | UA,AA,AG,GA | AG,CC,GA | ||||||||||||||||||||||||
| 5S | 3 | 76 | 100 | 3°: base pair | Strong | B | 0.3 | 29.8 | 0.3 | 0.7 | 0.3 | 1.0 | 67.5 | 302 | AA,GG | AA,GG | |||||||||||||||||||||||||
| 5S | 3 | 77 | 99 | 3°: base pair | Strong | B | 98.7 | 0.3 | 0.3 | 0.7 | 302 | UA | |||||||||||||||||||||||||||||
| 5S | 3 | 78 | 98 | 3°: base pair | Significant | B | 0.3 | 1.3 | 10.6 | 0.7 | 85.8 | 0.3 | 0.7 | 0.3 | 302 | AA,AG | AG,GA | ||||||||||||||||||||||||
| 16S | 7 | 129 | 232 | A:G | cWW | 3°: base pair | Strong | B | 1.5 | 17.8 | 11.5 | 1.0 | 0.4 | 25.1 | 0.1 | 0.1 | 38.0 | 0.2 | 0.2 | 2.4 | 0.3 | 0.1 | 1.2 | 4743 | CG,UA,UG,AG,GA | GC,UA,AG | 113 | 88 | 42 | 0.42 | 0.21 | 0.52 | 0.73 | 0.32 | 0.58 | 0.24 | 1.08 | 0.0 | 0.8 | ||
| 16S | 8 | 145 | 177 | G:G | cWW | 3°: base pair | Strong | B | 6.7 | 24.1 | 2.4 | 2.8 | 0.2 | 21.8 | 0.1 | 0.1 | 0.3 | 0.1 | 0.1 | 0.1 | 40.8 | 0.1 | 0.3 | 4809 | GC,CG,UA,AU,UG,GG | UA,AU,GG | 147 | 99 | 32 | 0.26 | 0.09 | 0.0 | 0.09 | 0.36 | 0.58 | 0.3 | 1.23 | 0.0 | 0.82 | ||
| 16S | 8 | 152 | 169 | A:C | tHW | 3°: base pair | Strong | B | 0.1 | 0.4 | 10.5 | 0.3 | 1.1 | 79.6 | 0.2 | 0.1 | 0.6 | 0.5 | 0.8 | 5.4 | 0.1 | 0.3 | 4869 | GU,AC,GG | GU,UG,AC,CA | 72 | 84 | 46 | 0.59 | 0.54 | 0.91 | 1.45 | 0.01 | 0.11 | 1.2 | 1.01 | 0.0 | 0.83 | |||
| 16S | 11 | 245 | 283 | U:U | cWW | 3°: base pair | Strong | B | 25.2 | 0.1 | 0.1 | 74.3 | 4985 | CC,UU | CC,UU | 24 | 24 | 21 | 0.88 | 0.98 | 1.0 | 1.98 | 0.0 | 0.0 | 1.17 | 1.16 | 0.0 | 0.85 | |||||||||||||
| 23S | 19.2 | 319 | 323 | G:C | cWW | 3°: base pair | Strong | B | 27.4 | 68.7 | 0.4 | 1.8 | 1.1 | 0.7 | 281 | GC,CG | GC,CG | 5 | 6 | 4 | 0.73 | 0.88 | 0.96 | 1.84 | 0.96 | 0.98 | 1.0 | 1.04 | 0.0 | 0.86 | |||||||||||
| 16S | 13 | 321 | 332 | A:G | cWW | 3°: base pair | Strong | B | 0.1 | 0.1 | 0.1 | 99.3 | 0.1 | 5065 | AG | 7 | 6 | 0 | 0.0 | 0.04 | 0.0 | 0.04 | 0.0 | 0.0 | 1.97 | 1.95 | 0.0 | 0.86 | |||||||||||||
| 16S | 15 | 367 | 393 | U:A | cWW | 3°: base pair | Strong | B | 0.4 | 99.2 | 0.2 | 0.1 | 4947 | UA | GC,UA,AU | 7 | 5 | 6 | 1.0 | 0.75 | 1.0 | 1.75 | 1.0 | 1.0 | 1.93 | 1.94 | 0.0 | 0.84 | |||||||||||||
| 23S | 21 | 383 | 391 | C:A | cWW | 3°: base pair | ??? | B | 0.4 | 1.4 | 96.8 | 1.4 | 281 | CA | UG,CA | 3 | 2 | 1 | 0.4 | 0.8 | 1.0 | 1.8 | 0.0 | 0.02 | 1.78 | 1.74 | 0.01 | 0.85 | |||||||||||||
| 16S | 17 | 438 | 496 | U:A | tWH | 3°: base pair | Strong | B | 71.9 | 0.2 | 1.9 | 0.5 | 2.2 | 22.9 | 0.1 | 0.2 | 4678 | UA,GA,GG | UA,GG | 34 | 32 | 14 | 0.42 | 0.82 | 0.95 | 1.77 | 0.72 | 0.72 | 1.03 | 1.17 | 0.0 | 0.8 | |||||||||
| 16S | 17 | 440 | 497 | C:G | cWW | 3°: base pair | Strong | B | 0.4 | 51.4 | 15.3 | 3.9 | 2.8 | 0.6 | 0.1 | 0.5 | 0.1 | 0.1 | 0.9 | 0.1 | 0.1 | 22.0 | 1.6 | 4693 | CG,UA,AU,UG,UU | CG,GA,UU | 79 | 82 | 38 | 0.47 | 0.49 | 0.76 | 1.24 | 0.72 | 0.75 | 0.63 | 0.41 | 0.01 | 0.79 | ||
| 16S | 17 | 441 | 493 | A:A | cWW | 3°: base pair | Strong | B | 14.1 | 4.2 | 0.6 | 8.8 | 3.5 | 2.9 | 41.7 | 2.4 | 1.0 | 18.0 | 1.4 | 0.1 | 1.1 | 4684 | GC,CG,AU,GU,UG,AA,AC,GA | GC,CG,AA | 144 | 123 | 54 | 0.4 | 0.32 | 0.61 | 0.93 | 0.28 | 0.34 | 0.54 | 0.4 | 0.01 | 0.79 | ||||
| 16S | 17 | 450 | 483 | G:C | cWW | 3°: base pair | Strong | B | 94.0 | 1.1 | 2.6 | 1.3 | 0.2 | 0.1 | 0.1 | 0.1 | 0.1 | 0.2 | 4780 | GC,UA | GC,CG,UA,AU | 31 | 30 | 26 | 0.85 | 0.85 | 0.99 | 1.84 | 0.99 | 0.99 | 1.59 | 1.59 | 0.0 | 0.81 | |||||||
| 23S | 24.1 | 531 | 2018 | C:G | cWW | 3°: base pair | Strong | B | 1.7 | 63.9 | 21.0 | 8.6 | 3.0 | 0.9 | 0.4 | 0.4 | 233 | CG,UA,AU,UG | GC,CG,UA,AU | 9 | 5 | 4 | 0.57 | 0.88 | 0.96 | 1.84 | 0.96 | 0.99 | 0.79 | 0.69 | 0.01 | 0.71 | |||||||||
| 23S | 25 | 537 | 556 | G:A | cWW | 3°: base pair | Strong | B | 1.8 | 14.5 | 83.0 | 0.7 | 282 | AA,GA | CG,GA | 10 | 3 | 1 | 0.15 | 0.11 | 0.0 | 0.11 | 0.02 | 0.02 | 1.2 | 1.87 | 0.01 | 0.86 | |||||||||||||
| 23S | 25 | 538 | 555 | A:G | cWW | 3°: base pair | Weak | B | 0.7 | 1.1 | 97.5 | 0.4 | 0.4 | 281 | AG | GU,AG | 1 | 3 | 0 | 0.0 | 0.33 | 0.99 | 1.32 | 0.0 | 0.01 | 1.87 | 1.85 | 0.0 | 0.86 | ||||||||||||
| 23S | 25.1 | 563 | 578 | A:G | cWW | 3°: base pair | Strong | B | 1.1 | 31.9 | 66.7 | 0.4 | 282 | AG,GA | AG,GA | 3 | 4 | 2 | 0.57 | 0.96 | 0.99 | 1.94 | 0.0 | 0.0 | 1.08 | 1.09 | 0.0 | 0.86 | |||||||||||||
| 23S | 25.1 | 565 | 576 | C:U | cWW | 3°: base pair | Strong | B | 0.7 | 1.4 | 0.4 | 93.3 | 3.5 | 0.7 | 282 | CU,UC | CU,UC | 5 | 3 | 2 | 0.5 | 0.53 | 0.97 | 1.49 | 0.01 | 0.02 | 1.58 | 1.75 | 0.0 | 0.86 | |||||||||||
| 16S | 19.1 | 575 | 880 | G:C | cWW | 3°: base pair | Strong | B | 98.6 | 0.4 | 0.2 | 0.1 | 0.2 | 0.4 | 4383 | GC | GC,AU | 6 | 9 | 3 | 0.4 | 0.44 | 0.99 | 1.44 | 0.99 | 1.0 | 1.91 | 1.88 | 0.0 | 0.74 | |||||||||||
| 16S | 20 | 582 | 758 | C:C | No BP | 3°: base pair | Strong | B | 0.1 | 11.2 | 2.6 | 68.4 | 0.1 | 0.2 | 15.6 | 0.8 | 0.6 | 0.3 | 4697 | CG,UA,UG,CC | UG,CC | 54 | 47 | 17 | 0.34 | 0.5 | 0.84 | 1.34 | 0.14 | 0.82 | 1.11 | 1.08 | 0.0 | 0.8 | |||||||
| 16S | 21 | 611 | 629 | C:A | cWW | 3°: base pair | Strong | B | 0.5 | 18.5 | 4.8 | 2.2 | 3.2 | 4.2 | 2.8 | 0.5 | 3.0 | 51.1 | 2.0 | 1.8 | 1.7 | 0.9 | 0.9 | 0.8 | 1.1 | 4598 | CG,UA,AU,GU,UG,AA,AG,CA,CC | GU,UG,AC,CA | 133 | 124 | 22 | 0.17 | 0.17 | 0.0 | 0.17 | 0.26 | 0.34 | 0.7 | 0.54 | 0.0 | 0.78 |
| 23S | 31 | 637 | 651 | A:G | cWW | 3°: base pair | Strong | B | 0.7 | 0.4 | 97.9 | 1.1 | 281 | AG | 2 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.01 | 0.01 | 1.92 | 1.91 | 0.0 | 0.86 | ||||||||||||||
| 16S | 22 | 663 | 742 | A:G | cWW | 3°: base pair | Strong | B | 0.8 | 0.9 | 2.3 | 0.1 | 0.3 | 0.5 | 0.3 | 0.1 | 94.3 | 0.2 | 0.1 | 4794 | UA,AG | GC,UA,AG | 30 | 27 | 13 | 0.46 | 0.56 | 0.97 | 1.53 | 0.04 | 0.05 | 1.64 | 1.7 | 0.0 | 0.82 | ||||||
| 16S | 23 | 674 | 716 | G:A | cWW | 3°: base pair | Strong | B | 0.1 | 99.7 | 4834 | GA | 3 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.98 | 1.98 | 0.0 | 0.82 | ||||||||||||||||
| 23S | 32 | 674 | 806 | G:C | cWW | 3°: base pair | ??? | B | 98.8 | 0.4 | 0.8 | 242 | GC | 1 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.93 | 1.95 | 0.0 | 0.74 | |||||||||||||||
| 23S | 33 | 698 | 763 | C:G | cWW | 3°: base pair | Strong | B | 98.9 | 0.7 | 0.4 | 282 | CG | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 0.99 | 1.94 | 1.96 | 0.0 | 0.86 | |||||||||||||||
| 23S | 34 | 713 | 718 | G:A | cWW | 3°: base pair | Strong | B | 0.7 | 97.9 | 0.7 | 0.4 | 0.4 | 282 | GA | GA,UC | 3 | 2 | 1 | 0.4 | 0.2 | 0.0 | 0.2 | 0.01 | 0.01 | 1.87 | 1.91 | 0.0 | 0.86 | ||||||||||||
| 16S | 23.1 | 722 | 733 | G:G | tWW | 3°: base pair | Strong | B | 0.2 | 0.2 | 0.1 | 24.5 | 2.9 | 0.5 | 71.3 | 0.1 | 4860 | AA,AG,GG | AA,GG | 39 | 43 | 31 | 0.76 | 0.86 | 0.96 | 1.82 | 0.0 | 0.01 | 1.13 | 1.13 | 0.0 | 0.83 | |||||||||
| 23S | 38 | 847 | 933 | U:A | cWW | 3°: base pair | Strong | B | 49.6 | 44.2 | 1.7 | 2.5 | 0.4 | 1.2 | 0.4 | 242 | UA,AU,UG | UA,AU | 15 | 14 | 9 | 0.62 | 0.88 | 0.94 | 1.81 | 0.94 | 0.98 | 0.86 | 0.78 | 0.0 | 0.74 | ||||||||||
| 23S | 38 | 857 | 920 | G:A | cWW | 3°: base pair | Strong | B | 0.4 | 1.2 | 1.7 | 0.4 | 46.3 | 50.0 | 242 | AG,GA | AG,GA | 10 | 8 | 6 | 0.67 | 0.93 | 0.96 | 1.89 | 0.03 | 0.03 | 0.92 | 0.86 | 0.0 | 0.74 | |||||||||||
| 16S | 30 | 945 | 1236 | G:A | cWW | 3°: base pair | Strong | B | 0.4 | 0.1 | 99.2 | 0.2 | 4190 | GA | 7 | 2 | 1 | 0.22 | 0.08 | 0.0 | 0.08 | 0.0 | 0.0 | 1.92 | 1.99 | 0.0 | 0.71 | ||||||||||||||
| 16S | 33.2 | 1026 | 1035 | G:A | cWW | 3°: base pair | Strong | B | 0.9 | 23.6 | 3.0 | 0.4 | 0.1 | 1.1 | 0.2 | 0.1 | 29.6 | 0.2 | 40.7 | 4412 | CG,UA,GA | CG,AU,GA | 62 | 45 | 25 | 0.47 | 0.81 | 0.9 | 1.71 | 0.47 | 0.49 | -0.58 | -0.43 | 0.01 | 0.45 | ||||||
| 23S | 42 | 1032 | 1122 | A:G | cWW | 3°: base pair | Strong | B | 0.4 | 2.9 | 0.8 | 0.8 | 94.6 | 0.4 | 239 | UG,AG | UA,AG | 4 | 3 | 0 | 0.0 | 0.08 | 0.0 | 0.08 | 0.0 | 0.03 | 1.75 | 1.82 | 0.0 | 0.73 | |||||||||||
| 23S | 42 | 1039 | 1116 | A:G | cWW | 3°: base pair | Strong | B | 32.4 | 0.8 | 0.4 | 26.1 | 18.3 | 0.4 | 3.3 | 17.4 | 0.8 | 241 | GC,AU,GU,AC,AG | GC,CG,UA,AU | 11 | 14 | 4 | 0.32 | 0.41 | 0.6 | 1.0 | 0.6 | 0.78 | 0.91 | 0.47 | 0.0 | 0.74 | ||||||||
| 23S | 42 | 1040 | 1115 | A:G | cWW | 3°: base pair | Strong | B | 6.2 | 6.6 | 46.1 | 11.6 | 0.8 | 1.2 | 0.8 | 24.9 | 0.4 | 1.2 | 241 | GC,CG,UA,AU,AG | GC,UA,AG | 15 | 15 | 7 | 0.47 | 0.58 | 0.77 | 1.35 | 0.7 | 0.73 | 0.39 | 0.39 | 0.0 | 0.74 | |||||||
| 16S | 34 | 1061 | 1195 | G:C | cWW | 3°: base pair | No Support | B | 99.4 | 0.4 | 0.1 | 4267 | GC | 1 | 11 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 1.0 | 1.98 | 1.94 | 0.0 | 0.73 | |||||||||||||||
| 16S | 34 | 1062 | 1194 | U:U | cWW | 3°: base pair | Strong | B | 0.1 | 0.1 | 0.1 | 99.5 | 0.1 | 4400 | UU | 3 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.97 | 1.98 | 0.0 | 0.75 | |||||||||||||
| 23S | 43.1 | 1082 | 1086 | U:A | tWW | 3°: base pair | Strong | B | 0.8 | 98.8 | 0.4 | 247 | UA | CG,UA | 2 | 1 | 1 | 0.67 | 0.67 | 1.0 | 1.66 | 1.0 | 1.0 | 1.89 | 1.93 | 0.0 | 0.76 | ||||||||||||||
| 23S | 44 | 1087 | 1102 | G:C | cWW | 3°: base pair | Strong | B | 98.4 | 0.8 | 0.4 | 0.4 | 248 | GC | GC,CG,AU | 3 | 0 | 0 | 0.0 | 0.75 | 1.0 | 1.75 | 1.0 | 1.0 | 1.87 | 1.86 | 0.0 | 0.76 | |||||||||||||
| 23S | 46 | 1196 | 1250 | C:G | cWW | 3°: base pair | Strong | B | 98.5 | 0.4 | 0.4 | 0.4 | 0.4 | 266 | CG | CG,UA | 2 | 2 | 1 | 0.5 | 0.25 | 0.99 | 1.24 | 0.99 | 0.99 | 1.94 | 1.9 | 0.0 | 0.82 | ||||||||||||
| 23S | 46 | 1203 | 1242 | U:U | cWW | 3°: base pair | Strong | B | 2.3 | 7.5 | 24.8 | 25.9 | 0.4 | 0.8 | 38.0 | 0.4 | 266 | GC,CG,UA,AU,UU | GC,CG,UU | 14 | 17 | 11 | 0.71 | 0.16 | 0.0 | 0.16 | 0.61 | 0.61 | 0.59 | 0.66 | 0.0 | 0.81 | |||||||||
| 23S | 46 | 1204 | 1241 | A:A | cWW | 3°: base pair | Strong | B | 27.0 | 3.0 | 9.9 | 8.7 | 2.3 | 9.9 | 34.2 | 0.8 | 0.8 | 1.9 | 1.1 | 0.4 | 263 | GC,CG,UA,AU,GU,UG,AA | GC,UG,AA,CU | 16 | 14 | 7 | 0.47 | 0.58 | 0.72 | 1.3 | 0.49 | 0.61 | 0.25 | 0.21 | 0.0 | 0.8 | |||||
| 23S | 46.1 | 1263 | 2016 | U:U | cWW | 3°: base pair | Strong | B | 0.4 | 99.6 | 236 | UU | 0 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 1.96 | 0.0 | 0.72 | ||||||||||||||||
| 16S | 42 | 1303 | 1334 | C:G | cWW | 3°: base pair | Strong | B | 0.2 | 99.5 | 0.1 | 0.1 | 4645 | CG | GC,CG | 4 | 6 | 2 | 0.4 | 0.39 | 1.0 | 1.39 | 1.0 | 1.0 | 1.97 | 1.96 | 0.0 | 0.79 | |||||||||||||
| 16S | 42 | 1307 | 1330 | U:U | cWW | 3°: base pair | Strong | B | 0.1 | 2.3 | 97.5 | 4656 | CC,UU | CC,UU | 15 | 16 | 14 | 0.9 | 0.92 | 1.0 | 1.92 | 0.0 | 0.0 | 1.84 | 1.83 | 0.0 | 0.8 | ||||||||||||||
| 23S | 51 | 1348 | 1598 | C:A | cWW | 3°: base pair | Significant | B | 57.0 | 5.3 | 0.8 | 1.1 | 0.8 | 35.0 | 263 | GC,UA,CA | GC,AU,UG,CA | 7 | 5 | 2 | 0.33 | 0.85 | 0.94 | 1.78 | 0.63 | 0.65 | 0.71 | 0.81 | 0.0 | 0.81 | |||||||||||
| 16S | 43 | 1357 | 1365 | A:G | cWW | 3°: base pair | Strong | B | 0.1 | 0.1 | 0.1 | 93.0 | 6.4 | 0.1 | 4572 | AG,GA | AG,GA | 30 | 29 | 26 | 0.88 | 0.92 | 0.99 | 1.92 | 0.0 | 0.0 | 1.63 | 1.62 | 0.0 | 0.78 | |||||||||||
| 23S | 52 | 1359 | 1372 | A:U | cWW | 3°: base pair | Strong | B | 0.4 | 99.2 | 0.4 | 264 | AU | UA,AU | 1 | 1 | 0 | 0.0 | 0.5 | 1.0 | 1.5 | 1.0 | 1.0 | 1.93 | 1.94 | 0.0 | 0.81 | ||||||||||||||
| 16S | 44 | 1399 | 1504 | C:G | cWW | 3°: base pair | Strong | B | 99.4 | 0.1 | 0.1 | 0.1 | 0.2 | 0.2 | 0.2 | 1733 | CG | 2 | 2 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 0.99 | 1.98 | 1.95 | 0.0 | 0.29 | |||||||||||
| 16S | 44 | 1402 | 1500 | C:A | cWW | 3°: base pair | Strong | B | 0.3 | 0.1 | 99.4 | 0.1 | 0.2 | 1871 | CA | 7 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.95 | 1.95 | 0.0 | 0.32 | |||||||||||||
| 16S | 44 | 1407 | 1494 | C:G | cWW | 3°: base pair | ??? | B | 99.0 | 0.5 | 0.2 | 0.1 | 0.2 | 1855 | CG | 9 | 4 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 0.99 | 1.94 | 1.92 | 0.0 | 0.32 | |||||||||||||
| 16S | 44 | 1413 | 1487 | A:G | cWW | 3°: base pair | Strong | B | 0.3 | 0.2 | 0.1 | 99.3 | 0.1 | 2752 | AG | 3 | 4 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.01 | 0.01 | 1.97 | 1.95 | 0.0 | 0.47 | |||||||||||||
| 23S | 55 | 1425 | 1573 | G:G | cWW | 3°: base pair | Strong | B | 0.8 | 0.4 | 15.2 | 0.4 | 22.0 | 0.4 | 0.4 | 60.6 | 264 | UA,UG,GG | UA,GG | 13 | 9 | 4 | 0.36 | 0.39 | 0.76 | 1.14 | 0.16 | 0.39 | 0.96 | 1.27 | 0.0 | 0.81 | |||||||||
| 23S | 59 | 1527 | 1544 | G:A | No BP | 3°: base pair | Strong | B | 3.4 | 13.6 | 5.7 | 0.4 | 2.7 | 1.5 | 62.1 | 0.8 | 9.9 | 264 | GC,CG,UA,GU,GA | CG,GA,UU | 9 | 3 | 1 | 0.17 | 0.51 | 0.85 | 1.36 | 0.26 | 0.29 | 0.36 | 0.4 | 0.0 | 0.73 | ||||||||
| 23S | 59 | 1528 | 1543 | A:G | tHS | 3°: base pair | Strong | B | 5.3 | 0.4 | 12.1 | 1.1 | 1.5 | 1.1 | 0.8 | 65.5 | 12.1 | 264 | GC,UA,AG | GC,UA,AG | 5 | 5 | 3 | 0.6 | 0.78 | 0.94 | 1.72 | 0.2 | 0.23 | 0.4 | 0.35 | 0.0 | 0.71 | ||||||||
| 23S | 62 | 1690 | 1697 | A:G | tHS | 3°: base pair | Strong | B | 11.1 | 74.8 | 2.3 | 11.5 | 0.4 | 262 | AA,AG,CA,UU | AG,CA,UU | 5 | 11 | 2 | 0.25 | 0.55 | 0.89 | 1.44 | 0.0 | 0.0 | 1.33 | 0.9 | 0.0 | 0.8 | ||||||||||||
| 23S | 63.1 | 1752 | 1756 | C:G | cWW | 3°: base pair | Strong | B | 9.9 | 67.9 | 15.3 | 1.9 | 3.4 | 1.1 | 0.4 | 262 | GC,CG,UA,UG | GC,CG,UA,AU | 11 | 8 | 7 | 0.74 | 0.85 | 0.95 | 1.81 | 0.95 | 0.99 | 0.67 | 0.78 | 0.0 | 0.8 | ||||||||||
| 23S | 66 | 1800 | 1817 | C:G | tWW | 3°: base pair | Strong | B | 100.0 | 262 | CG | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.96 | 2.0 | 0.0 | 0.8 | |||||||||||||||||
| 23S | 66 | 1803 | 1814 | A:G | tHS | 3°: base pair | Weak | B | 0.4 | 0.4 | 0.4 | 98.5 | 0.4 | 259 | AG | 0 | 3 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 1.85 | 0.0 | 0.79 | |||||||||||||
| 23S | 68 | 1855 | 1887 | U:C | cWW | 3°: base pair | Strong | B | 15.4 | 15.1 | 39.4 | 3.5 | 0.4 | 0.8 | 1.2 | 23.9 | 0.4 | 259 | GC,AU,GU,AC,UC | GU,CA,UC | 17 | 14 | 2 | 0.13 | 0.4 | 0.64 | 1.04 | 0.3 | 0.7 | 0.45 | 0.98 | 0.0 | 0.79 | ||||||||
| 23S | 68 | 1856 | 1886 | U:U | cWW | 3°: base pair | Strong | B | 23.2 | 0.8 | 0.4 | 42.5 | 33.2 | 259 | GC,AU,UU | GC,CG,UA,AU | 13 | 10 | 10 | 0.87 | 0.42 | 0.67 | 1.09 | 0.67 | 0.67 | 0.4 | 1.12 | 0.0 | 0.79 | ||||||||||||
| 23S | 68 | 1858 | 1884 | A:G | tHS/tSH | 3°: base pair | Strong | B | 0.8 | 1.2 | 35.8 | 61.9 | 0.4 | 260 | AG,GA | AG,GA | 4 | 5 | 3 | 0.67 | 0.95 | 0.98 | 1.93 | 0.01 | 0.01 | 0.95 | 1.05 | 0.0 | 0.79 | ||||||||||||
| 23S | 68 | 1859 | 1883 | U:U | cWW | 3°: base pair | Strong | B | 2.3 | 0.8 | 0.4 | 1.1 | 0.8 | 0.8 | 60.9 | 0.4 | 32.6 | 261 | GC,AG,UU | GC,AG,UU | 8 | 7 | 3 | 0.4 | 0.89 | 0.96 | 1.85 | 0.03 | 0.05 | 0.82 | 0.84 | 0.0 | 0.8 | ||||||||
| 23S | 69.1 | 1925 | 1929 | C:G | tWW | 3°: base pair | Strong | B | 99.2 | 0.4 | 0.4 | 241 | CG | 0 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 1.95 | 1.91 | 0.0 | 0.74 | |||||||||||||||
| 23S | 75 | 2086 | 2233 | U:U | cWW | 3°: base pair | Strong | B | 39.8 | 60.2 | 241 | UA,UU | 0 | 8 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.4 | 0.4 | 2.0 | 1.03 | 0.0 | 0.74 | ||||||||||||||||
| 23S | 76 | 2104 | 2185 | C:U | cWW | 3°: base pair | Strong | B | 0.8 | 37.9 | 16.7 | 11.2 | 8.8 | 19.2 | 4.2 | 1.2 | 240 | CG,UA,AU,UG,CU,UC | GC,CG,UA,AU | 22 | 21 | 7 | 0.33 | 0.46 | 0.67 | 1.13 | 0.67 | 0.75 | 0.6 | 0.32 | 0.0 | 0.74 | |||||||||
| 23S | 76 | 2109 | 2180 | U:U | cWW | 3°: base pair | Weak | B | 0.4 | 99.6 | 241 | UU | 1 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.96 | 2.0 | 0.0 | 0.74 | ||||||||||||||||
| 23S | 81.1 | 2282 | 2427 | G:C | cWW | 3°: base pair | Strong | B | 94.1 | 5.5 | 0.4 | 238 | GC,UA | GC,UA,AU | 3 | 3 | 3 | 1.0 | 1.0 | 1.0 | 2.0 | 1.0 | 1.0 | 1.61 | 1.64 | 0.0 | 0.73 | ||||||||||||||
| 23S | 86 | 2351 | 2366 | G:A | cWW | 3°: base pair | Weak | B | 0.8 | 0.8 | 12.8 | 0.4 | 84.3 | 0.4 | 0.4 | 242 | AA,GA | AG,GA | 7 | 4 | 1 | 0.18 | 0.03 | 0.0 | 0.03 | 0.01 | 0.02 | 1.44 | 1.75 | 0.0 | 0.74 | ||||||||||
| 23S | 86 | 2352 | 2365 | A:G | cWW | 3°: base pair | Strong | B | 8.7 | 90.9 | 0.4 | 242 | AA,AG | AG,GA | 1 | 6 | 1 | 0.29 | 0.04 | 0.0 | 0.04 | 0.0 | 0.0 | 1.96 | 1.56 | 0.0 | 0.74 | ||||||||||||||
| 23S | 90 | 2507 | 2582 | C:G | cWW | 3°: base pair | Strong | B | 100.0 | 242 | CG | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 2.0 | 2.0 | 0.0 | 0.74 | |||||||||||||||||
| 23S | 90 | 2512 | 2574 | C:G | cWW | 3°: base pair | Strong | B | 97.9 | 1.2 | 0.8 | 243 | CG | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 0.99 | 1.95 | 1.82 | 0.0 | 0.74 | |||||||||||||||
| 23S | 96 | 2675 | 2732 | A:G | cWW | 3°: base pair | Strong | B | 0.4 | 0.4 | 2.5 | 0.4 | 95.8 | 0.4 | 236 | GU,AG | GU,AG | 3 | 3 | 2 | 0.67 | 0.67 | 0.99 | 1.65 | 0.01 | 0.03 | 1.81 | 1.68 | 0.0 | 0.72 | |||||||||||
| 23S | 99 | 2808 | 2891 | G:U | No BP | 3°: base pair | ??? | B | 63.1 | 10.8 | 19.7 | 3.9 | 0.5 | 2.0 | 203 | UA,AU,GU,UG | UA,GU | 10 | 3 | 0 | 0.0 | 0.56 | 0.84 | 1.41 | 0.75 | 0.99 | 0.66 | 0.74 | 0.0 | 0.61 | |||||||||||
| 23S | 99 | 2813 | 2887 | A:A | cWW | 3°: base pair | Strong | B | 29.1 | 30.0 | 25.1 | 5.4 | 8.9 | 1.0 | 0.5 | 203 | GC,CG,UA,AU,AA | GC,CG,UA,AU | 13 | 13 | 7 | 0.54 | 0.85 | 0.9 | 1.75 | 0.9 | 0.9 | -0.01 | 0.18 | 0.01 | 0.62 | ||||||||||
| 23S | 99 | 2814 | 2886 | A:A | cWW | 3°: base pair | Strong | B | 59.1 | 13.3 | 1.0 | 15.3 | 10.3 | 0.5 | 0.5 | 203 | CG,UA,UG,AA | CG,UA,AU | 12 | 10 | 5 | 0.46 | 0.35 | 0.73 | 1.08 | 0.73 | 0.89 | 0.67 | 1.13 | 0.0 | 0.62 | ||||||||||
| 23S | 101 | 2844 | 2872 | G:A | cWW | 3°: base pair | Strong | B | 0.5 | 0.5 | 1.0 | 3.4 | 1.0 | 7.3 | 48.8 | 27.8 | 9.3 | 0.5 | 205 | GU,AA,AG,GA,GG | AG,GA | 14 | 10 | 2 | 0.17 | 0.55 | 0.77 | 1.32 | 0.02 | 0.06 | 0.83 | 0.79 | 0.01 | 0.63 | |||||||
| 23S | 101 | 2845 | 2871 | U:U | cWW | 3°: base pair | No Support | B | 6.3 | 3.9 | 3.4 | 29.3 | 10.7 | 0.5 | 45.9 | 205 | GC,CG,AU,GU,AG,UU | GC,AG,UU | 15 | 12 | 7 | 0.52 | 0.32 | 0.63 | 0.94 | 0.14 | 0.43 | 0.36 | 1.07 | 0.0 | 0.63 | ||||||||||
| 23S | 101 | 2849 | 2866 | U:U | No BP | 3°: base pair | Strong | B | 3.4 | 1.5 | 0.5 | 1.0 | 1.0 | 51.7 | 41.0 | 205 | GU,GG,UU | GG,UU | 12 | 11 | 7 | 0.61 | 0.85 | 0.93 | 1.77 | 0.0 | 0.05 | 0.9 | 0.89 | 0.0 | 0.63 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
f.predominant_types, f.covarying_types,
s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
on s.molecule = f.molecule and s.position_1 = f.position_1
and s.position_2 = f.position_2 and s.group_code = f.group_code;