Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

61 rows where group_code = "A", molecule = "23S" and strength = "Weak" sorted by position_1

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Suggested facets: reference_base_pair, GC, CG, UA, AU, GU, UG, AA, sequences, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, DfDel, PNuc

conformation 3

tertiary_type 2

strength 1

  • Weak · 61 ✖

molecule 1

  • 23S · 61 ✖

group_code 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 1 8 2895 C:G cWW   Weak A 24.2 24.2 27.3 3.0   3.0         3.0           15.1 33 GC,CG,UA,AU,UG,CC GC,CG,UA,AU 5 8 2 0.31 0.9 0.93 1.82 0.93 0.96 0.1 -0.3 0.07 0.68
23S 6.1 66 88 C:G cWW 3°: pseudoknot Weak A   94.4 5.6                             36 CG,UA CG,UA 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.69 1.69 0.0 0.88
23S 10 158 168 U:G cWW   Weak A           2.8     5.6 2.8             88.9 36 UG,AG,CA AG,CA 1 1 1 1.0 0.5 0.75 1.25 0.0 0.25 -0.59 -0.37 0.07 0.1
23S 16 274 363 C:G cWW   Weak A 33.3 30.6 8.3     2.8         5.6   5.6   13.9     36 GC,CG,UA,UG,CC,GA,UC GC,CG,UA 4 4 1 0.25 0.58 0.72 1.31 0.72 0.75 0.44 0.59 0.0 0.88
23S 18 281 359 C:G cWW   Weak A 19.4 33.3 25.0 8.3 5.6           2.8       5.6     36 GC,CG,UA,AU,GU,CC,UC GC,CG,UA,AU 5 5 3 0.6 0.79 0.86 1.65 0.86 0.92 0.15 0.06 0.0 0.88
23S 18 284 356 U:G cWW   Weak A   72.2 2.8 5.6 2.8 11.1       5.6               36 CG,UA,AU,GU,UG,CA CG,UA,AU 3 2 0 0.0 0.3 0.81 1.11 0.81 0.94 0.95 1.18 0.0 0.88
23S 18 293 347 U:A cWW   Weak A   2.8 44.4   2.8 16.7 19.4             11.1     2.8 36 CG,UA,GU,UG,AA,GG UA,GG 1 2 1 0.67 0.21 0.57 0.78 0.49 0.69 0.37 0.92 0.02 0.85
23S 20 327 335 G:C cWW   Weak A 100.0                                 36 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88
23S 21 378 396 C:G cWW   Weak A 5.4 27.0     18.9 48.6                       37 GC,CG,GU,UG GU,UG 4 2 2 0.67 0.37 0.68 1.04 0.32 1.0 0.49 1.01 0.0 0.9
23S 21 382 392 A:U cWW   Weak A   21.6                           78.4   37 CG,UU CG,UU 1 1 1 1.0 1.0 1.0 2.0 0.22 0.22 1.25 1.25 0.0 0.9
23S 25 538 555 A:G cWW 3°: base pair Weak A 70.3     5.4 24.3                         37 GC,AU,GU GC,AU 2 3 1 0.4 0.18 0.0 0.18 0.76 1.0 1.7 1.12 0.0 0.9
23S 25.1 564 577 C:G cWW   Weak A   100.0                               37 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
23S 27 600 657 G:U cWW   Weak A 21.6     8.1 70.3                         37 GC,AU,GU   1 1 0 0.0 0.0 0.0 0.0 0.3 1.0 1.59 1.25 0.0 0.9
23S 31 641 647 U:G cWW   Weak A   24.3       67.6                     8.1 37 CG,UG   4 0 0 0.0 0.0 0.0 0.0 0.27 1.0 0.67 1.43 0.0 0.83
23S 32 671 809 C:G cWW   Weak A   100.0                               37 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
23S 33 687 775 C:G No BP   Weak A   100.0                               37 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
23S 33 695 767 G:U cWW   Weak A 43.2   2.7   54.1                         37 GC,UA,GU UA,GU 0 6 0 0.0 0.06 0.0 0.06 0.46 1.0 1.82 0.86 0.0 0.9
23S 34 703 729 U:G No BP   Weak A   32.4       67.6                       37 CG,UG   3 0 0 0.0 0.0 0.0 0.0 0.32 1.0 1.09 2.0 0.0 0.9
23S 34 707 724 G:U cWW   Weak A         100.0                         37 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.9
23S 37 826 831 U:G cWW   Weak A   18.9       81.1                       37 CG,UG   2 0 0 0.0 0.0 0.0 0.0 0.19 1.0 1.3 2.0 0.0 0.9
23S 42 1051 1108 G:U cWW   Weak A 75.0     11.1 13.9                         36 GC,AU,GU GC,AU 1 1 0 0.0 0.44 0.86 1.31 0.86 1.0 1.5 1.2 0.0 0.88
23S 46 1215 1234 G:U cWW   Weak A         100.0                         37 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.9
23S 54 1415 1587 U:G cWW   Weak A 41.5 31.7       2.4                     24.4 41 GC,CG,UG GC,CG 2 3 1 0.4 0.93 0.97 1.9 0.97 1.0 -0.17 -0.04 0.0 0.76
23S 56 1436 1556 G:C cWW   Weak A 95.1     2.4 2.4                         41 GC,AU,GU GC,AU 0 1 0 0.0 0.5 0.98 1.48 0.98 1.0 1.83 1.72 0.0 1.0
23S 56 1440 1551 U:A cWW   Weak A 53.7 2.4   2.4 41.5                         41 GC,CG,AU,GU GC,CG,AU 1 5 0 0.0 0.1 0.0 0.1 0.58 1.0 1.67 0.87 0.0 1.0
23S 57 1445 1466 G:U cWW   Weak A 7.3     9.8 9.8   2.4 61.0     7.3       2.4     41 GC,AU,GU,AA,AC,CC,UC GU,AC 3 3 1 0.33 0.25 0.71 0.96 0.17 0.27 0.83 1.13 0.0 1.0
23S 58 1468 1524 U:G cWW   Weak A   29.3   2.4 4.9 2.4 2.4         4.9 2.4     41.5 9.7 41 CG,AU,GU,UG,AA,CU,GA,UU CG,AA,UU 4 3 2 0.57 0.65 0.81 1.46 0.35 0.43 -0.06 0.52 0.1 0.9
23S 58 1478 1513 G:U cWW   Weak A 61.0       26.8     2.4     9.8             41 GC,GU,AC,CC   0 4 0 0.0 0.0 0.0 0.0 0.61 0.88 1.38 1.16 0.0 1.0
23S 58 1481 1510 U:G cWW   Weak A                               7.3 92.6 41 UU   2 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.3 -0.23 0.0 0.0
23S 58 1483 1506 G:U cWW   Weak A 43.9 9.8       43.9                   2.4   41 GC,CG,UG,UU GC,UG 5 3 2 0.5 0.78 0.88 1.66 0.54 0.98 0.64 0.87 0.0 1.0
23S 63 1707 1751 G:U cWW   Weak A 2.4       97.6                         41 GC,GU   0 1 0 0.0 0.0 0.0 0.0 0.02 1.0 2.0 1.83 0.0 1.0
23S 64 1770 1982 G:U cWW   Weak A 4.9 90.2       4.9                       41 GC,CG,UG GC,CG 2 1 1 0.67 0.5 0.95 1.45 0.95 1.0 1.44 1.72 0.0 1.0
23S 65 1775 1789 U:A tHS   Weak A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 66 1799 1820 G:U No BP   Weak A 90.2       9.8                         41 GC,GU   0 2 0 0.0 0.0 0.0 0.0 0.9 1.0 2.0 1.54 0.0 1.0
23S 66 1803 1814 A:G tHS 3°: base pair Weak A         75.6     17.1     2.4         4.9   41 GU,AC,CC,UU GU,AC 2 1 0 0.0 0.7 0.93 1.63 0.0 0.76 0.92 1.29 0.0 1.0
23S 68 1835 1905 G:C cWW   Weak A 100.0                                 41 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 68 1841 1901 U:A cWW   Weak A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 68 1842 1898 G:U cWW   Weak A 9.8       90.2                         41 GC,GU   0 2 0 0.0 0.0 0.0 0.0 0.1 1.0 2.0 1.54 0.0 1.0
23S 68 1851 1891 U:G cWW   Weak A           100.0                       41 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0
23S 69 1907 1923 G:U cWW   Weak A         100.0                         41 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0
23S 69 1911 1919 U:A No BP   Weak A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 71 1945 1961 G:C cWW   Weak A 100.0                                 41 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 71 1947 1959 C:G cWW   Weak A   100.0                               41 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 73 2056 2612 G:C cWW   Weak A 100.0                                 41 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 74 2065 2445 C:G cWW   Weak A   100.0                               41 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 74 2075 2434 U:A No BP   Weak A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 75 2077 2243 A:U cWW   Weak A       100.0                           41 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 76 2100 2189 G:U cWW   Weak A 43.9     4.9 36.6   4.9             9.8       41 GC,AU,GU,AA,GG GC,AA 2 5 1 0.29 0.09 0.0 0.09 0.49 0.85 1.54 0.41 0.0 1.0
23S 76 2109 2180 U:U cWW 3°: base pair Weak A     53.7     14.6       7.3         9.8 14.6   41 UA,UG,CA,UC,UU   1 4 0 0.0 0.0 0.0 0.0 0.54 0.68 1.62 0.43 0.0 1.0
23S 77 2120 2178 G:C cWW   Weak A 92.7   4.9   2.4                         41 GC,UA,GU GC,UA 1 2 1 0.67 0.67 0.98 1.64 0.98 1.0 1.72 1.55 0.0 1.0
23S 78 2136 2155 G:U cWW   Weak A   43.9 4.9 4.9 26.8       2.4       14.6 2.4       41 CG,UA,AU,GU,AG,GA,GG CG,UA,GU 6 5 3 0.55 0.56 0.76 1.32 0.54 0.81 0.47 0.51 0.0 1.0
23S 78 2143 2148 C:G cWW   Weak A   80.5       19.5                       41 CG,UG   3 0 0 0.0 0.0 0.0 0.0 0.81 1.0 1.29 2.0 0.0 1.0
23S 80 2249 2255 U:G No BP   Weak A           100.0                       41 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0
23S 83 2291 2341 U:G cWW   Weak A   4.9 7.3     87.8                       41 CG,UA,UG   1 0 0 0.0 0.0 0.0 0.0 0.12 1.0 1.72 1.62 0.0 1.0
23S 85.1 2328 2387 A:U cWW 3°: pseudoknot Weak A       100.0                           41 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 86 2351 2366 G:A cWW 3°: base pair Weak A 36.6   4.9 48.8 9.8                         41 GC,UA,AU,GU GC,UA,AU 4 4 2 0.5 0.81 0.9 1.71 0.9 1.0 0.77 0.8 0.0 1.0
23S 89 2455 2496 G:C cWW   Weak A       61.0 39.0                         41 AU,GU   4 0 0 0.0 0.0 0.0 0.0 0.61 1.0 1.03 2.0 0.0 1.0
23S 89 2460 2490 U:G cWW   Weak A           100.0                       41 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0
23S 93 2592 2601 G:C cWW   Weak A 100.0                                 41 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 95 2652 2668 C:G cWW   Weak A   22.5 7.5 22.5   22.5       25.0               40 CG,UA,AU,UG,CA AU,UG,CA 5 5 3 0.6 0.6 0.7 1.3 0.53 0.75 0.48 0.47 0.0 0.98
23S 96 2696 2711 U:A cWW   Weak A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;