Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

47 rows where group_code = "A", molecule = "16S" and strength = "Weak" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, GC, UA, AU, GU, UG, CA, CU, GG, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

conformation 4

tertiary_type 2

strength 1

  • Weak · 47 ✖

molecule 1

  • 16S · 47 ✖

group_code 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 1 13 21 U:G No BP   Weak A           100.0                       154 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.58
16S 3 35 549 G:C cWW   Weak A 3.8 1.1     94.0             0.5         0.5 184 GC,GU CG,GU 2 3 1 0.4 0.2 0.0 0.2 0.05 0.99 1.89 1.65 0.0 0.69
16S 3 37 547 U:A tWS   Weak A     100.0                             183 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69
16S 4 39 403 G:C cWW   Weak A     99.0     1.0                       193 UA   0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.93 0.0 0.73
16S 5 54 357 C:G cWW   Weak A   97.5               2.5               201 CG,CA   0 0 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.85 0.0 0.76
16S 5 56 356 U:A cWW   Weak A     97.5                           2.5 201 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.8 0.02 0.74
16S 5 58 354 C:G cWW   Weak A 19.0 76.5       0.5         1.5           2.5 200 GC,CG GC,CG 4 3 2 0.57 0.91 0.98 1.88 0.98 0.98 1.24 1.11 0.02 0.74
16S 6 62 105 U:G cWW   Weak A           100.0                       202 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.77
16S 6 68 101 G:A cWW 3°: base pair Weak A 78.9     6.0 0.5 1.0             11.6 0.5     1.5 199 GC,AU,GA GC,AU,UG 4 8 3 0.5 0.36 0.87 1.23 0.86 0.88 1.45 0.91 0.0 0.74
16S 12 292 308 G:C cWW   Weak A 100.0                                 229 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.87
16S 14 342 347 C:G cWW   Weak A 2.2 92.9       0.4                     4.5 224 GC,CG GC,CG 1 0 0 0.0 0.83 0.99 1.83 0.99 1.0 1.46 1.85 0.04 0.81
16S 15 375 388 U:G No BP   Weak A     2.2     95.6                     2.2 228 UA,UG   0 3 0 0.0 0.0 0.0 0.0 0.02 1.0 1.81 1.85 0.02 0.84
16S 16 406 436 G:C cWW   Weak A 97.7       0.5     0.5     0.5           1.0 218 GC   2 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.86 1.91 0.0 0.82
16S 16 416 427 G:U cWW   Weak A                                 100.0 237     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
16S 16 419 424 C:G cWW   Weak A                                 100.0 237     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
16S 19.1 571 865 U:A cWW 3°: pseudoknot Weak A     100.0                             220 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83
16S 20 584 757 G:U cWW   Weak A 1.8     0.5 97.7                         219 GU   1 1 0 0.0 0.0 0.0 0.0 0.02 1.0 1.96 1.72 0.0 0.83
16S 21 594 645 U:G cWW   Weak A   26.0 15.2 3.9   51.5 1.7     1.7               231 CG,UA,AU,UG AU,UG,CA 11 10 3 0.29 0.12 0.0 0.12 0.45 0.96 0.86 1.09 0.0 0.88
16S 21 597 643 G:C cWW   Weak A 95.7             3.9                 0.4 233 GC,AC   3 0 0 0.0 0.0 0.0 0.0 0.96 0.96 1.77 1.95 0.0 0.88
16S 21 605 633 U:G cWW   Weak A 30.4 10.4   2.2 7.0 47.8               0.4 0.4   1.3 230 GC,CG,AU,GU,UG GC,AU,UG 10 8 2 0.22 0.64 0.81 1.46 0.44 0.99 0.51 0.6 0.01 0.86
16S 21 606 632 G:U No BP   Weak A 5.2     2.2 47.0 4.3           0.4 0.9 3.9 4.3 31.0 0.9 232 GC,AU,GU,UG,GG,UC,UU GU,UC 3 14 0 0.0 0.08 0.0 0.08 0.07 0.59 0.86 1.0 0.01 0.87
16S 22 658 748 C:G cWW   Weak A   25.1 8.2             24.7 7.3     33.3 0.5 0.9   219 CG,UA,CA,CC,GG CA,GG,UU 3 7 2 0.4 0.38 0.59 0.97 0.33 0.33 0.66 0.66 0.0 0.83
16S 22 666 740 G:U cWW   Weak A 32.0 16.7 0.9 0.9 49.5                         222 GC,CG,GU CG,UA,GU 2 6 1 0.25 0.35 0.67 1.02 0.51 1.0 1.23 0.48 0.0 0.84
16S 23 677 713 U:G cWW   Weak A   87.5       2.2       0.4   9.9           232 CG,UG,CU   2 4 0 0.0 0.0 0.0 0.0 0.88 0.9 1.85 1.51 0.0 0.88
16S 23 684 706 U:A cWW   Weak A 85.7       0.9   3.5 10.0                   230 GC,AA,AC GC,AA 3 3 0 0.0 0.24 0.89 1.13 0.86 0.86 1.43 1.72 0.0 0.87
16S 23 690 697 G:U tSH   Weak A       34.3 65.7                         233 AU,GU   2 0 0 0.0 0.0 0.0 0.0 0.34 1.0 1.07 2.0 0.0 0.88
16S 26 832 854 G:U cWW   Weak A 3.0     2.6 93.0         0.4       0.4   0.4   230 GC,AU,GU GU,CA 2 2 1 0.5 0.06 0.0 0.06 0.06 0.99 1.75 1.72 0.0 0.87
16S 26.1 861 868 G:C cWW   Weak A 83.1       16.0     0.4                 0.4 231 GC,GU   0 5 0 0.0 0.0 0.0 0.0 0.83 1.0 1.91 1.36 0.0 0.87
16S 28 925 1391 G:U cWW   Weak A         100.0                         177 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.67
16S 28 935 1380 A:U cWW   Weak A 1.1     98.9                           189 AU GC,AU 3 1 1 0.5 1.0 1.0 2.0 1.0 1.0 1.77 1.92 0.0 0.72
16S 29 942 1341 G:U cWW   Weak A         100.0                         191 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.72
16S 30 950 1231 U:G cWW   Weak A   0.5       99.5                       184 UG   0 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.91 2.0 0.0 0.7
16S 31 960 975 U:A No BP   Weak A           100.0                       208 UG   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.79
16S 31 961 974 U:A No BP   Weak A   3.3 3.3     78.5                   14.8   209 CG,UA,UG,UU   3 2 0 0.0 0.0 0.0 0.0 0.07 0.85 1.79 1.22 0.0 0.79
16S 34 1052 1206 U:G cWW   Weak A   1.6       97.8     0.5                 186 UG   0 0 0 0.0 0.0 0.0 0.0 0.02 0.99 1.84 2.0 0.0 0.7
16S 34 1053 1205 G:U No BP   Weak A 1.0     0.5 98.5                         197 GU   0 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.92 0.0 0.75
16S 34 1058 1199 G:U cWW   Weak A         100.0                         195 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.74
16S 40 1158 1178 C:G No BP   Weak A   99.5       0.5                       195 CG   1 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.95 2.0 0.0 0.74
16S 40 1159 1177 U:G No BP   Weak A   53.0       46.0           0.5       0.5   198 CG,UG CG,UU 7 1 0 0.0 0.01 0.0 0.01 0.53 0.99 1.0 1.92 0.0 0.75
16S 41 1255 1282 G:C cWW   Weak A 100.0                                 207 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.78
16S 44 1401 1501 G:C cWW   Weak A 100.0                                 104 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.39
16S 44 1425 1475 U:G cWW   Weak A 9.9 19.3 9.9 7.0 1.2 39.2                     13.4 171 GC,CG,UA,AU,UG GC,AU,UG 11 7 4 0.44 0.36 0.65 1.01 0.53 1.0 0.3 -0.07 0.07 0.56
16S 44 1435 1466 G:C cWW   Weak A 96.0       1.2     0.6                 2.3 173 GC   1 0 0 0.0 0.0 0.0 0.0 0.98 0.99 1.75 1.71 0.0 0.64
16S 44 1442 1460 G:C cWW   Weak A 23.7 18.3 3.0 17.2 12.4 19.5             0.6 0.6   0.6 4.2 169 GC,CG,UA,AU,GU,UG GC,AU,UG 11 11 4 0.36 0.51 0.63 1.14 0.65 0.98 -0.17 0.11 0.01 0.61
16S 45 1506 1529 U:G No BP   Weak A           95.0                 5.0     80 UG,UC   0 1 0 0.0 0.0 0.0 0.0 0.0 0.95 2.0 1.71 0.0 0.3
16S 45 1511 1524 G:C cWW   Weak A 97.5       2.5                         80 GC,GU   0 1 0 0.0 0.0 0.0 0.0 0.97 1.0 2.0 1.83 0.0 0.3
16S 45 1512 1523 U:G cWW   Weak A     4.9     95.1                       82 UA,UG   0 1 0 0.0 0.0 0.0 0.0 0.05 1.0 2.0 1.75 0.0 0.31

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;