Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

13 rows where group_code = 3 and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, reference_base_pair, GC, AC, GG, gap, sequences, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

tertiary_type 2

molecule 2

conformation 2

strength 1

  • No Support · 13 ✖

group_code 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 18 521 528 G:C cWW 3°: pseudoknot No Support 3 99.5       0.1     0.1           0.1     0.1 5577 GC   3 4 0 0.0 0.05 0.0 0.05 1.0 1.0 1.97 1.96 0.0 0.78
23S 25.1 566 575 U:A cWW   No Support 3     99.8     0.2                       525 UA   0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.98 0.0 0.83
16S 28 924 1392 C:G cWW   No Support 3   99.6       0.1           0.1         0.1 4928 CG   5 3 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.69
16S 30 944 1237 G:C No BP   No Support 3 99.6             0.1                 0.2 5326 GC   2 1 0 0.0 0.11 0.0 0.11 1.0 1.0 1.96 1.99 0.0 0.74
16S 31 963 972 G:C cWW   No Support 3 99.5             0.1     0.1           0.3 5549 GC   5 3 0 0.0 0.14 0.0 0.14 1.0 1.0 1.96 1.97 0.0 0.77
16S 34 1061 1195 G:C cWW 3°: base pair No Support 3 97.0     0.3 2.3           0.1     0.1     0.1 5466 GC,GU GC,AU 2 16 1 0.11 0.1 0.0 0.1 0.97 1.0 1.95 1.79 0.0 0.76
23S 49.1 1310 1604 G:C cWW   No Support 3 99.6             0.2                 0.2 464 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.97 0.0 0.73
23S 74 2064 2446 C:G cWW   No Support 3   99.3       0.5                     0.2 423 CG   0 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.96 1.97 0.0 0.67
23S 74 2074 2435 U:A cWW   No Support 3     99.1                           0.9 437 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.91 0.01 0.69
23S 90 2508 2580 G:U cWW   No Support 3         100.0                         418 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.66
23S 90 2511 2577 U:A No BP   No Support 3     100.0                             417 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.66
23S 93 2591 2603 C:G cWW   No Support 3   99.5                             0.4 417 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.95 0.0 0.66
23S 101 2845 2871 U:U cWW 3°: base pair No Support 3 21.5 3.3   16.0 19.0 3.0     6.6 0.3   0.6   0.3   29.0 0.3 331 GC,CG,AU,GU,UG,AG,UU GC,AG,CA,UU 21 19 10 0.5 0.4 0.58 0.98 0.41 0.63 0.19 0.71 0.01 0.52

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;