Base-pair statistics (frequencies and scores together) (view)
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- sequences
- Number of sequences in the group.
11 rows where group_code = 3, molecule = "23S" and strength = "Significant" sorted by position_1
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Suggested facets: reference_base_pair, GG, UU, gap, sequences, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, DfDel, PNuc
| molecule | helix_number | position_1 ▼ | position_2 | reference_base_pair | conformation | tertiary_type | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | sequences | predominant_types | covarying_types | Xch | Ych | PE | PES | Cov1 | Cov3 | C1_C3 | WC | WCGU | XCons | YCons | DfDel | PNuc |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23S | 5 | 53 | 117 | A:G | tHS | 3°: base pair | Significant | 3 | 0.5 | 1.5 | 97.5 | 0.2 | 0.2 | 405 | AG | 2 | 2 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.02 | 0.02 | 1.9 | 1.86 | 0.0 | 0.64 | |||||||||||||
| 23S | 6.1 | 64 | 90 | A:U | cWW | 3°: pseudoknot | Significant | 3 | 14.1 | 5.1 | 0.7 | 22.1 | 0.2 | 29.0 | 0.2 | 28.4 | 411 | GC,CG,AU,AA | GC,CG,AA | 15 | 11 | 8 | 0.61 | 0.45 | 0.67 | 1.12 | 0.59 | 0.59 | 0.89 | -0.72 | 0.19 | 0.47 | |||||||||
| 23S | 13 | 239 | 258 | C:G | cWW | Significant | 3 | 3.3 | 8.2 | 20.3 | 4.9 | 1.0 | 31.6 | 3.9 | 9.8 | 0.2 | 0.4 | 13.9 | 2.1 | 0.4 | 512 | GC,CG,UA,AU,UG,CA,CC,UC,UU | AU,UG,CC,GA | 52 | 42 | 18 | 0.38 | 0.22 | 0.47 | 0.69 | 0.37 | 0.7 | 0.71 | 0.13 | 0.0 | 0.81 | |||||
| 23S | 18 | 287 | 353 | G:C | cWW | Significant | 3 | 12.4 | 6.5 | 9.4 | 14.5 | 6.5 | 3.1 | 8.2 | 1.1 | 1.5 | 0.2 | 2.9 | 4.8 | 3.4 | 6.9 | 1.0 | 2.7 | 14.9 | 523 | GC,CG,UA,AU,GU,UG,AA,CC,CU,GA,GG,UU | GC,CG,UA,AU | 52 | 50 | 19 | 0.37 | 0.4 | 0.5 | 0.9 | 0.5 | 0.62 | -0.35 | -0.31 | 0.02 | 0.71 | |
| 23S | 33 | 688 | 774 | U:G | No BP | Significant | 3 | 89.5 | 5.3 | 5.0 | 0.2 | 524 | UA,UG,UC | 0 | 7 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.9 | 0.95 | 2.0 | 1.4 | 0.0 | 0.83 | |||||||||||||||
| 23S | 38 | 874 | 903 | G:C | cWW | Significant | 3 | 30.6 | 2.6 | 1.2 | 2.4 | 21.3 | 0.4 | 0.2 | 39.8 | 1.4 | 493 | GC,CG,AU,GU,GA | CG,AU,GA | 9 | 16 | 6 | 0.48 | 0.09 | 0.0 | 0.09 | 0.37 | 0.59 | 1.42 | 0.2 | 0.0 | 0.77 | |||||||||
| 23S | 42 | 1035 | 1120 | U:G | cWW | Significant | 3 | 0.2 | 0.2 | 98.3 | 0.8 | 0.4 | 482 | UG | 0 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.99 | 1.93 | 1.89 | 0.0 | 0.76 | ||||||||||||||
| 23S | 51 | 1348 | 1598 | C:A | cWW | 3°: base pair | Significant | 3 | 32.1 | 4.3 | 0.4 | 0.6 | 0.4 | 0.9 | 19.7 | 41.6 | 468 | GC,UA,CA | GC,AU,UG,CA | 8 | 22 | 2 | 0.13 | 0.78 | 0.9 | 1.68 | 0.63 | 0.65 | -0.67 | 0.12 | 0.33 | 0.43 | |||||||||
| 23S | 61 | 1667 | 1993 | G:U | tSH | Significant | 3 | 0.2 | 0.2 | 99.3 | 0.2 | 430 | GU | 1 | 1 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.01 | 1.0 | 1.96 | 1.98 | 0.0 | 0.68 | |||||||||||||||
| 23S | 77 | 2124 | 2174 | G:C | cWW | Significant | 3 | 100.0 | 437 | GC | 0 | 0 | 0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 2.0 | 2.0 | 0.0 | 0.69 | ||||||||||||||||||
| 23S | 88 | 2401 | 2415 | U:G | cWW | Significant | 3 | 2.3 | 29.5 | 1.6 | 1.6 | 59.3 | 4.1 | 0.5 | 1.1 | 437 | GC,CG,UG,AG | GC,AU,UG | 21 | 10 | 8 | 0.52 | 0.1 | 0.0 | 0.1 | 0.35 | 0.94 | 0.7 | 1.49 | 0.0 | 0.69 |
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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
f.predominant_types, f.covarying_types,
s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
on s.molecule = f.molecule and s.position_1 = f.position_1
and s.position_2 = f.position_2 and s.group_code = f.group_code;