Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tWW" and tertiary_type = "3°: pseudoknot" sorted by position_1

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Suggested facets: UU, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, YCons, DfDel

group_code 7

tertiary_type 1

  • 3°: pseudoknot · 7 ✖

strength 1

molecule 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong T   0.1 2.1             0.1 60.3         36.9 0.5 770 UA,CC,UU CC,UU 13 19 12 0.75 0.94 0.98 1.92 0.02 0.02 1.02 0.86 0.0 0.73
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong 3                     37.9         61.9 0.2 412 CC,UU CC,UU 7 7 7 1.0 1.0 1.0 2.0 0.0 0.0 1.01 1.05 0.0 0.65
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong B                     63.1         36.9   236 CC,UU CC,UU 4 4 4 1.0 1.0 1.0 2.0 0.0 0.0 1.08 1.04 0.0 0.72
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong A                     17.1         82.9   41 CC,UU CC,UU 3 3 3 1.0 1.0 1.0 2.0 0.0 0.0 1.34 1.34 0.0 1.0
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong C                     100.0             95 CC   0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.92
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong E                               99.3 0.7 135 UU   0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 1.93 2.0 0.0 0.51
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong M   0.4 6.1             0.4 81.0         11.0 1.2 263 UA,CC,UU CC,UU 6 11 5 0.59 0.62 0.93 1.55 0.07 0.07 1.31 1.02 0.01 0.83

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;