Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

5 rows where conformation = "tWW", group_code = "M" and molecule = "23S" sorted by position_1

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Suggested facets: reference_base_pair, AA, CA, predominant_types, covarying_types, Xch, Ych, PES, DfDel

tertiary_type 2

strength 1

molecule 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 12.1 234 430 U:A tWW   Strong M   3.5 9.4 0.4   0.4 1.2 0.4   0.4     0.4     0.8 83.1 254 CG,UA CG,UA,AU 3 5 1 0.25 0.53 0.79 1.32 0.79 0.81 -0.63 -0.53 0.04 0.14
23S 43.1 1082 1086 U:A tWW 3°: base pair Strong M 0.4 0.7 13.1 3.3 0.4   0.4     0.4       0.4 0.4 2.5 78.2 275 UA,AU,UU GC,CG,UA,AU 16 8 4 0.33 0.5 0.8 1.3 0.8 0.82 0.16 -0.62 0.6 0.19
23S 65.1 1782 2586 U:U tWW 3°: pseudoknot Strong M   0.4 6.1             0.4 81.0         11.0 1.2 263 UA,CC,UU CC,UU 6 11 5 0.59 0.62 0.93 1.55 0.07 0.07 1.31 1.02 0.01 0.83
23S 66 1800 1817 C:G tWW 3°: base pair Strong M   70.3 1.8 1.4     0.4     2.8 1.1 0.7         21.6 283 CG,CA CG,UA,AU 5 11 2 0.25 0.39 0.94 1.33 0.94 0.94 0.56 0.44 0.0 0.71
23S 69.1 1925 1929 C:G tWW 3°: base pair Strong M   93.9 3.2 1.3   1.0                   0.6   311 CG,UA CG,UA,AU 6 5 3 0.55 0.74 0.98 1.72 0.98 0.99 1.62 1.66 0.0 1.0

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;