Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tWS" sorted by position_1

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Suggested facets: UG, AA, CA, GA, UU, predominant_types, Xch, Ych, PE, PES, Cov1, C1_C3, WC, WCGU, YCons, DfDel, PNuc

group_code 7

strength 1

molecule 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 3 37 547 U:A tWS   Weak T     97.5 0.1   0.7 0.2     0.9     0.2   0.1 0.1 0.3 5551 UA UA,AU 34 24 5 0.17 0.06 0.0 0.06 0.98 0.99 1.85 1.89 0.0 0.65
16S 3 37 547 U:A tWS   Weak 3     98.6     0.7 0.1     0.2     0.1     0.1 0.2 4665 UA   4 9 0 0.0 0.02 0.0 0.02 0.99 1.0 1.93 1.92 0.0 0.65
16S 3 37 547 U:A tWS   Weak B     98.7     0.7 0.1     0.2     0.1     0.1 0.1 3570 UA   4 5 0 0.0 0.02 0.0 0.02 0.99 0.99 1.94 1.91 0.0 0.61
16S 3 37 547 U:A tWS   Weak A     100.0                             183 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.69
16S 3 37 547 U:A tWS   Weak C     96.7       1.3     0.7     0.7       0.7 152 UA   3 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.79 1.94 0.01 0.83
16S 3 37 547 U:A tWS   Weak E     98.0     0.8       0.1         0.1 0.1 0.9 912 UA   0 4 0 0.0 0.0 0.0 0.0 0.99 1.0 1.9 1.91 0.01 0.86
16S 3 37 547 U:A tWS   Weak M 0.1 0.1 90.8 0.5   0.5 0.5   0.3 5.3   0.1 0.5   0.1 0.4 0.5 738 UA,CA GC,CG,UA,AU 27 15 5 0.24 0.09 0.0 0.09 0.92 0.93 1.48 1.78 0.0 0.63

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;