Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tWH" and molecule = "16S" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: UG, AA, predominant_types, covarying_types, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, DfDel, PNuc

group_code 7

tertiary_type 1

strength 1

molecule 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 17 438 496 U:A tWH 3°: base pair Strong T     53.9     0.2 1.5   0.3       1.5 16.2   0.2 25.9 6924 UA,GG UA,GG 44 43 17 0.39 0.81 0.95 1.76 0.73 0.73 -0.04 0.06 0.01 0.6
16S 17 438 496 U:A tWH 3°: base pair Strong 3     59.6     0.2 1.5   0.4       1.7 18.9 0.1 0.2 17.5 5934 UA,GG UA,GG 38 36 17 0.46 0.82 0.95 1.77 0.72 0.72 0.2 0.31 0.0 0.68
16S 17 438 496 U:A tWH 3°: base pair Strong B     71.9     0.2 1.9   0.5       2.2 22.9 0.1 0.2   4678 UA,GA,GG UA,GG 34 32 14 0.42 0.82 0.95 1.77 0.72 0.72 1.03 1.17 0.0 0.8
16S 17 438 496 U:A tWH 3°: base pair Strong A     77.0     0.4       0.4       21.7     0.4 226 UA,GG UA,GG 4 4 4 1.0 0.96 0.99 1.95 0.77 0.78 1.16 1.19 0.0 0.85
16S 17 438 496 U:A tWH 3°: base pair Strong C     98.8     0.6             0.6         163 UA   1 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 1.95 0.0 0.9
16S 17 438 496 U:A tWH 3°: base pair Strong E                                 100.0 1030     0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 -0.04 0.0 0.0
16S 17 438 496 U:A tWH 3°: base pair Strong M     4.3 0.1     1.7           0.4     0.2 93.3 835 UA UA,AU 5 6 0 0.0 0.0 0.0 0.0 0.04 0.04 -0.31 -0.42 0.0 0.0

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;