Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

2 rows where conformation = "tWH", group_code = 3 and strength = "Strong" sorted by position_1

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molecule 2

tertiary_type 1

strength 1

  • Strong · 2 ✖

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 17 438 496 U:A tWH 3°: base pair Strong 3     59.6     0.2 1.5   0.4       1.7 18.9 0.1 0.2 17.5 5934 UA,GG UA,GG 38 36 17 0.46 0.82 0.95 1.77 0.72 0.72 0.2 0.31 0.0 0.68
23S 28 607 621 U:A tWH   Strong 3 1.3 1.7 67.6 4.8 2.5 5.6 6.0 2.1 1.2 0.2 0.8   1.5 2.7 0.6   1.6 521 UA,AU,GU,UG,AA,AC,GG UA,AU,CC,GG 16 15 7 0.45 0.27 0.77 1.04 0.77 0.85 0.76 0.74 0.0 0.81

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;