Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tSS" sorted by position_1

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Suggested facets: GU, AA, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, YCons, DfDel

group_code 7

strength 1

molecule 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 14 265 427 A:U tSS   Strong T 0.2   0.5 72.2 1.0   0.8         0.1     0.1 0.3 24.7 869 AU GC,UA,AU 12 8 4 0.4 0.22 0.97 1.19 0.97 0.98 0.53 0.58 0.0 0.63
23S 14 265 427 A:U tSS   Strong 3       96.9 1.0   1.0         0.2     0.2 0.6 0.2 515 AU AU,UC 6 2 0 0.0 0.07 0.0 0.07 0.97 0.98 1.81 1.89 0.0 0.82
23S 14 265 427 A:U tSS   Strong B       97.5 0.7   1.8                     277 AU   1 1 0 0.0 0.0 0.0 0.0 0.97 0.98 1.94 1.87 0.0 0.85
23S 14 265 427 A:U tSS   Strong A       100.0                           36 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.88
23S 14 265 427 A:U tSS   Strong C       97.0 2.0   1.0                     100 AU,GU   0 1 0 0.0 0.0 0.0 0.0 0.97 0.99 1.86 1.92 0.0 0.97
23S 14 265 427 A:U tSS   Strong E       95.5 1.5             0.5     0.5 1.5 0.5 202 AU AU,UC 5 1 0 0.0 0.12 0.0 0.12 0.96 0.97 1.65 1.92 0.0 0.76
23S 14 265 427 A:U tSS   Strong M 0.8   1.6 12.2 0.8   0.4                   84.3 254 AU GC,UA,AU 6 5 4 0.73 0.67 0.93 1.59 0.93 0.97 -0.46 -0.45 0.01 0.13

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;