Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tSH", molecule = "23S" and strength = "Significant" sorted by position_1

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Suggested facets: GU, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel

group_code 7

strength 1

  • Significant · 7 ✖

molecule 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 61 1667 1993 G:U tSH   Significant T 0.1   1.2 0.6 97.3   0.1           0.1 0.1   0.1 0.2 807 GU UA,GU 4 6 2 0.4 0.5 0.99 1.49 0.02 0.99 1.81 1.87 0.0 0.77
23S 61 1667 1993 G:U tSH   Significant 3 0.2     0.2 99.3                     0.2   430 GU   1 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.98 0.0 0.68
23S 61 1667 1993 G:U tSH   Significant B 0.4       99.2                     0.4   236 GU   0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.72
23S 61 1667 1993 G:U tSH   Significant A         100.0                         41 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0
23S 61 1667 1993 G:U tSH   Significant C         100.0                         101 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.98
23S 61 1667 1993 G:U tSH   Significant E       0.7 99.3                         153 GU   1 0 0 0.0 0.0 0.0 0.0 0.01 1.0 1.95 2.0 0.0 0.58
23S 61 1667 1993 G:U tSH   Significant M     3.6 1.4 93.1   0.4           0.4 0.4     0.7 276 UA,GU UA,GU 3 5 2 0.5 0.59 0.97 1.56 0.05 0.99 1.57 1.73 0.01 0.88

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;