Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tSH" and molecule = "16S" sorted by position_1

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Suggested facets: GC, GA, UU, gap, predominant_types, covarying_types, Xch, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, DfDel

group_code 7

strength 1

molecule 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 23 690 697 G:U tSH   Weak T 0.1 0.1 4.2 7.5 81.9   0.1     1.6 0.8 0.1 0.1   3.1 0.2 0.1 7180 UA,AU,GU,UC UA,GU,CC 103 33 7 0.1 0.28 0.87 1.15 0.12 0.94 1.05 1.41 0.0 0.84
16S 23 690 697 G:U tSH   Weak 3 0.1     7.7 91.8             0.1 0.1     0.1 0.1 6118 AU,GU   22 5 0 0.0 0.0 0.0 0.0 0.08 1.0 1.58 1.97 0.0 0.85
16S 23 690 697 G:U tSH   Weak B       8.0 91.6             0.1       0.1 0.1 4853 AU,GU   18 2 0 0.0 0.0 0.0 0.0 0.08 1.0 1.56 1.99 0.0 0.83
16S 23 690 697 G:U tSH   Weak A       34.3 65.7                         233 AU,GU   2 0 0 0.0 0.0 0.0 0.0 0.34 1.0 1.07 2.0 0.0 0.88
16S 23 690 697 G:U tSH   Weak C       10.1 88.8   0.6                   0.6 169 AU,GU GU,AA 3 1 0 0.0 0.06 0.0 0.06 0.1 0.99 1.45 1.95 0.01 0.92
16S 23 690 697 G:U tSH   Weak E 0.6     0.4 98.4               0.5 0.1       1032 GU   2 3 0 0.0 0.0 0.0 0.0 0.01 0.99 1.96 1.89 0.0 0.98
16S 23 690 697 G:U tSH   Weak M 0.2 0.4 33.7 5.1 13.8 0.1 0.7 0.2   13.0 6.3 0.1 0.4   24.8 0.8 0.3 901 UA,AU,GU,CA,CC,UC UA,GU,CC 78 27 7 0.13 0.3 0.54 0.84 0.4 0.54 0.43 0.43 0.0 0.77

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;