Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

4 rows where conformation = "tSH", group_code = "T" and strength = "Strong" sorted by position_1

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Suggested facets: reference_base_pair, UA, AA, XCons, DfDel

strength 1

  • Strong · 4 ✖

molecule 1

group_code 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 7 82 104 U:A tSH   Strong T   0.1 4.3 0.8 35.6 1.2 0.1 0.1 0.1 0.4 6.2   3.6 0.8 2.6 0.3 43.7 745 UA,GU,CC,GA,UC UA,GU,AG,CC 24 27 9 0.35 0.51 0.82 1.33 0.09 0.75 -0.57 -0.66 0.08 0.4
23S 11 195 200 A:U tSH   Strong T     1.2 95.8 0.1   0.5 0.2                 2.1 840 AU UA,AU 4 5 3 0.67 0.59 0.99 1.58 0.99 0.99 1.69 1.66 0.0 0.79
23S 78 2144 2147 G:A tSH   Strong T 0.1 3.2 1.2   0.2 21.9 0.4 0.5 0.2 0.5   0.5 32.4 0.4 0.4 0.7 37.6 848 CG,UG,GA UG,AC,CU,GA 27 21 14 0.58 0.76 0.89 1.65 0.07 0.43 -0.57 -0.49 0.0 0.51
23S 97 2746 2758 U:A tSH   Strong T   0.3 94.4 1.1 0.3 0.6 0.1     0.3         1.0 0.1 1.7 697 UA CG,UA,AU 8 11 6 0.63 0.37 0.97 1.35 0.97 0.98 1.67 1.57 0.0 0.66

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;