Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

5 rows where conformation = "tSH", group_code = "M" and molecule = "23S" sorted by position_1

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Suggested facets: reference_base_pair, AA, predominant_types, Xch, Ych, PE, PES, Cov3, DfDel

strength 2

molecule 1

group_code 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 7 82 104 U:A tSH   Strong M     3.8 1.7 3.8 0.4 0.4   0.4             0.9 88.4 234 UA,GU UA,GU,AG 4 2 1 0.33 0.56 0.7 1.26 0.48 0.85 -0.56 -0.45 0.01 0.09
23S 11 195 200 A:U tSH   Strong M     3.9 87.0     1.6 0.8                 6.7 254 UA,AU UA,AU 4 5 3 0.67 0.62 0.97 1.6 0.97 0.97 1.28 1.15 0.0 0.76
23S 61 1667 1993 G:U tSH   Significant M     3.6 1.4 93.1   0.4           0.4 0.4     0.7 276 UA,GU UA,GU 3 5 2 0.5 0.59 0.97 1.56 0.05 0.99 1.57 1.73 0.01 0.88
23S 78 2144 2147 G:A tSH   Strong M     1.9     0.3 1.0 1.0   1.3   0.3 3.9     1.3 89.0 309 GA AC,GA,UU 7 4 3 0.55 0.32 0.56 0.88 0.18 0.21 -0.53 -0.42 0.01 0.11
23S 97 2746 2758 U:A tSH   Strong M   0.8 85.0 2.9 0.8 1.7 0.4               2.9 0.4 5.0 240 UA,AU,UC CG,UA,AU 7 11 6 0.67 0.38 0.93 1.31 0.93 0.96 1.29 1.02 0.0 0.73

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;