Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

4 rows where conformation = "tSH", group_code = "E" and strength = "Strong" sorted by position_1

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Suggested facets: reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WCGU, DfDel

strength 1

  • Strong · 4 ✖

molecule 1

group_code 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 7 82 104 U:A tSH   Strong E           0.8                     99.1 119     5 0 0 0.0 0.0 0.0 0.0 0.0 1.0 -0.09 -0.05 0.0 0.0
23S 11 195 200 A:U tSH   Strong E       98.9 0.6                       0.6 179 AU   0 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.84 1.94 0.0 0.68
23S 78 2144 2147 G:A tSH   Strong E   16.8 0.6   1.3 32.3   0.6       1.9 16.1 1.9 0.6   27.7 155 CG,UG,GA UG,AC,CU,GA 13 11 6 0.5 0.47 0.7 1.17 0.24 0.7 -0.51 -0.26 0.01 0.43
23S 97 2746 2758 U:A tSH   Strong E     100.0                             131 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.5

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;