Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

4 rows where conformation = "tSH", group_code = "C" and strength = "Strong" sorted by position_1

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Suggested facets: reference_base_pair, Ych, PE, PES, Cov1, Cov3, C1_C3, XCons, YCons

strength 1

  • Strong · 4 ✖

molecule 1

group_code 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 7 82 104 U:A tSH   Strong C     2.0 2.0 91.8           2.0   1.0 1.0       98 UA,AU,GU,CC UA,GU,CC 4 4 3 0.75 0.5 0.96 1.46 0.04 0.96 1.57 1.58 0.0 0.95
23S 11 195 200 A:U tSH   Strong C       100.0                           100 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97
23S 78 2144 2147 G:A tSH   Strong C   1.0       93.1     2.0           2.0 2.0   101 UG,AG,UC,UU   2 1 1 0.67 0.0 0.0 0.0 0.01 0.94 1.78 1.72 0.0 0.98
23S 97 2746 2758 U:A tSH   Strong C     96.6             3.4               58 UA,CA   1 0 0 0.0 0.0 0.0 0.0 0.97 0.97 1.78 2.0 0.0 0.56

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;