Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

5 rows where conformation = "tSH", group_code = "B" and molecule = "23S" sorted by position_1

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Suggested facets: reference_base_pair, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons

strength 2

molecule 1

group_code 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 7 82 104 U:A tSH   Strong B   0.4 8.1   60.9 2.7   0.4     17.1   2.3 1.9 5.8   0.4 258 UA,GU,UG,CC,GA,UC UA,GU,CC 7 16 3 0.26 0.65 0.86 1.51 0.09 0.72 0.66 0.52 0.0 0.79
23S 11 195 200 A:U tSH   Strong B       100.0                           271 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.83
23S 61 1667 1993 G:U tSH   Significant B 0.4       99.2                     0.4   236 GU   0 1 0 0.0 0.0 0.0 0.0 0.0 1.0 1.96 1.96 0.0 0.72
23S 78 2144 2147 G:A tSH   Strong B 0.4   1.2     4.5             93.8         242 UG,GA UG,GA 3 3 2 0.67 0.73 0.98 1.72 0.02 0.06 1.64 1.7 0.0 0.74
23S 97 2746 2758 U:A tSH   Strong B     100.0                             227 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.95 0.0 0.7

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;