Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

6 rows where conformation = "tSH" and group_code = 3 sorted by position_1

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Suggested facets: reference_base_pair, GC, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, YCons, DfDel, PNuc

strength 3

molecule 2

group_code 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 7 82 104 U:A tSH   Strong 3   0.2 5.1   40.2 1.9   0.2   0.7 10.7   6.3 1.2 4.6   28.8 413 UA,GU,CC,GA,UC UA,GU,CC 16 21 5 0.27 0.51 0.79 1.29 0.07 0.67 -0.04 -0.57 0.12 0.47
23S 11 195 200 A:U tSH   Strong 3       99.6 0.2                       0.2 486 AU   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 1.98 0.0 0.77
16S 23 690 697 G:U tSH   Weak 3 0.1     7.7 91.8             0.1 0.1     0.1 0.1 6118 AU,GU   22 5 0 0.0 0.0 0.0 0.0 0.08 1.0 1.58 1.97 0.0 0.85
23S 61 1667 1993 G:U tSH   Significant 3 0.2     0.2 99.3                     0.2   430 GU   1 1 0 0.0 0.0 0.0 0.0 0.01 1.0 1.96 1.98 0.0 0.68
23S 78 2144 2147 G:A tSH   Strong 3 0.2 5.9 0.9   0.5 20.8   0.2       0.7 60.0 0.7 0.2   9.7 438 CG,UG,GA UG,AC,CU,GA 18 16 10 0.59 0.72 0.91 1.63 0.08 0.31 0.32 0.4 0.01 0.63
23S 97 2746 2758 U:A tSH   Strong 3     100.0                             399 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.63

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;