Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

7 rows where conformation = "tHS", molecule = "23S" and strength = "Significant" sorted by position_1

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Suggested facets: CG, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, DfDel

group_code 7

tertiary_type 1

strength 1

  • Significant · 7 ✖

molecule 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 5 53 117 A:G tHS 3°: base pair Significant T   0.4 1.5 2.1     0.8 0.3 66.2         0.1   0.3 28.1 719 AU,AG UA,AG 12 11 6 0.52 0.28 0.94 1.22 0.06 0.06 0.42 0.29 0.01 0.49
23S 5 53 117 A:G tHS 3°: base pair Significant 3   0.5   1.5         97.5         0.2     0.2 405 AG   2 2 0 0.0 0.0 0.0 0.0 0.02 0.02 1.9 1.86 0.0 0.64
23S 5 53 117 A:G tHS 3°: base pair Significant B                 100.0                 252 AG   0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77
23S 5 53 117 A:G tHS 3°: base pair Significant A   5.6   11.1         83.3                 36 CG,AU,AG   1 1 0 0.0 0.0 0.0 0.0 0.17 0.17 1.69 1.5 0.0 0.88
23S 5 53 117 A:G tHS 3°: base pair Significant C             6.2   93.8                 81 AA,AG   0 2 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.71 0.0 0.79
23S 5 53 117 A:G tHS 3°: base pair Significant E       1.7         96.6         0.9     0.9 117 AG   1 1 0 0.0 0.0 0.0 0.0 0.02 0.02 1.84 1.79 0.0 0.44
23S 5 53 117 A:G tHS 3°: base pair Significant M   0.4 4.7 3.9     0.4 0.9 2.1             0.9 86.6 233 UA,AU,AG CG,UA,AU 10 7 6 0.71 0.5 0.68 1.18 0.68 0.68 -0.51 -0.56 0.02 0.1

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;