crw2: basepair_combined: 5 rows where conformation = "tHS", group_code = "T" and molecule = "23S" sorted by position

predominant_types: Base-pair types shown in bold in the published table (most frequent).
covarying_types: Base-pair types marked * in the published table (involved in a covariation).
sequences: Number of sequences in the group.

5 rows where conformation = "tHS", group_code = "T" and molecule = "23S" sorted by position_1

descending

molecule	helix_number	position_1 ▼	position_2	reference_base_pair	conformation	tertiary_type	strength	group_code	GC	CG	UA	AU	GU	UG	AA	AC	AG	CA	CC	CU	GA	GG	UC	UU	gap	sequences	predominant_types	covarying_types	Xch	Ych	PE	PES	Cov1	Cov3	C1_C3	WC	WCGU	XCons	YCons	DfDel	PNuc
23S	5	53	117	A:G	tHS	3°: base pair	Significant	T		0.4	1.5	2.1			0.8	0.3	66.2					0.1		0.3	28.1	719	AU,AG	UA,AG	12	11	6	0.52	0.28	0.94	1.22	0.06	0.06	0.42	0.29	0.01	0.49
23S	59	1528	1543	A:G	tHS	3°: base pair	Strong	T	5.7	7.2	4.7	11.2	0.6	1.0	0.9	0.2	21.4	0.2	0.1	0.1				1.5	44.9	859	GC,CG,UA,AU,AG	GC,UA,AG,CU	18	21	12	0.61	0.31	0.58	0.89	0.52	0.55	-0.74	-0.81	0.0	0.45
23S	62	1690	1697	A:G	tHS	3°: base pair	Strong	T				0.4	0.4		10.8		53.5	2.9		0.4	0.1			3.9	27.7	836	AA,AG,CA,UU	AG,CA,UU	15	36	10	0.39	0.36	0.83	1.2	0.01	0.01	0.15	-0.16	0.0	0.58
23S	65	1775	1789	U:A	tHS		Weak	T		1.0	97.3	0.4			0.1								0.5	0.8		842	UA	CG,UA,AU	3	7	1	0.2	0.48	0.99	1.46	0.99	0.99	1.88	1.79	0.0	0.81
23S	66	1803	1814	A:G	tHS	3°: base pair	Weak	T	0.5	0.4	0.6	1.5	20.2	0.1	7.6	2.6	37.5	0.2	0.1	0.1				0.2	28.2	840	GU,AA,AC,AG	UA,GU,AG,CC	9	27	4	0.22	0.61	0.81	1.43	0.04	0.33	-0.16	-0.58	0.02	0.58

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JSON shape: default, array, newline-delimited

CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;

Base-pair statistics (frequencies and scores together) (view)

5 rows where conformation = "tHS", group_code = "T" and molecule = "23S" sorted by position_1

Advanced export