Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

2 rows where conformation = "tHS", group_code = "E" and strength = "Weak" sorted by position_1

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tertiary_type 1

strength 1

  • Weak · 2 ✖

molecule 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 65 1775 1789 U:A tHS   Weak E     97.4                       2.6     156 UA,UC   0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.83 0.0 0.59
23S 66 1803 1814 A:G tHS 3°: base pair Weak E 2.6 1.9 0.6 1.9 89.1     0.6                 3.2 156 GC,GU CG,UA,GU,AC 4 5 1 0.22 0.42 0.95 1.37 0.07 0.99 1.37 1.3 0.0 0.57

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;