Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

5 rows where conformation = "tHS", group_code = "E" and molecule = "23S" sorted by position_1

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Suggested facets: reference_base_pair, GU, sequences, PE, PES, Cov1, Cov3, C1_C3, WCGU, XCons, DfDel, PNuc

strength 3

tertiary_type 1

molecule 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 5 53 117 A:G tHS 3°: base pair Significant E       1.7         96.6         0.9     0.9 117 AG   1 1 0 0.0 0.0 0.0 0.0 0.02 0.02 1.84 1.79 0.0 0.44
23S 59 1528 1543 A:G tHS 3°: base pair Strong E 17.2 18.9 2.2 51.7 0.6 0.6     1.1               7.8 180 GC,CG,UA,AU GC,CG,UA,AU 6 9 6 0.8 0.94 0.98 1.92 0.98 0.99 0.05 0.14 0.01 0.63
23S 62 1690 1697 A:G tHS 3°: base pair Strong E         0.6   4.5   93.5 0.6   0.6           155 AA,AG GU,AG,CA 2 4 1 0.33 0.2 0.0 0.2 0.0 0.01 1.84 1.61 0.0 0.59
23S 65 1775 1789 U:A tHS   Weak E     97.4                       2.6     156 UA,UC   0 2 0 0.0 0.0 0.0 0.0 0.97 0.97 2.0 1.83 0.0 0.59
23S 66 1803 1814 A:G tHS 3°: base pair Weak E 2.6 1.9 0.6 1.9 89.1     0.6                 3.2 156 GC,GU CG,UA,GU,AC 4 5 1 0.22 0.42 0.95 1.37 0.07 0.99 1.37 1.3 0.0 0.57

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;