Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

5 rows where conformation = "tHS" and group_code = "C" sorted by position_1

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Suggested facets: reference_base_pair, gap, sequences, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, XCons, DfDel, PNuc

strength 3

tertiary_type 1

molecule 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 5 53 117 A:G tHS 3°: base pair Significant C             6.2   93.8                 81 AA,AG   0 2 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.71 0.0 0.79
23S 59 1528 1543 A:G tHS 3°: base pair Strong C   3.0 4.0 3.0   4.0 5.0   9.0 2.0   1.0       13.0 56.0 100 CG,UA,AU,UG,AA,AG,CA,UU AG,CA,UU 5 4 0 0.0 0.35 0.55 0.9 0.23 0.32 -0.68 -0.83 0.1 0.43
23S 62 1690 1697 A:G tHS 3°: base pair Strong C       1.0     46.5   50.5 1.0             1.0 101 AA,AG AG,CA 1 10 1 0.18 0.02 0.0 0.02 0.01 0.01 1.82 0.84 0.0 0.97
23S 65 1775 1789 U:A tHS   Weak C     100.0                             101 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.98
23S 66 1803 1814 A:G tHS 3°: base pair Weak C       4.0     53.5 11.9 29.7               1.0 101 AU,AA,AC,AG   0 10 0 0.0 0.0 0.0 0.0 0.04 0.04 2.0 0.36 0.01 0.97

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;