Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

5 rows where conformation = "tHS" and group_code = "B" sorted by position_1

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Suggested facets: reference_base_pair, gap, predominant_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, PNuc

strength 3

tertiary_type 1

molecule 1

group_code 1

conformation 1

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 5 53 117 A:G tHS 3°: base pair Significant B                 100.0                 252 AG   0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 2.0 0.0 0.77
23S 59 1528 1543 A:G tHS 3°: base pair Strong B 5.3 0.4 12.1   1.1 1.5 1.1 0.8 65.5               12.1 264 GC,UA,AG GC,UA,AG 5 5 3 0.6 0.78 0.94 1.72 0.2 0.23 0.4 0.35 0.0 0.71
23S 62 1690 1697 A:G tHS 3°: base pair Strong B             11.1   74.8 2.3           11.5 0.4 262 AA,AG,CA,UU AG,CA,UU 5 11 2 0.25 0.55 0.89 1.44 0.0 0.0 1.33 0.9 0.0 0.8
23S 65 1775 1789 U:A tHS   Weak B     99.6       0.4                     261 UA   1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 2.0 0.0 0.8
23S 66 1803 1814 A:G tHS 3°: base pair Weak B       0.4     0.4 0.4 98.5               0.4 259 AG   0 3 0 0.0 0.0 0.0 0.0 0.0 0.0 2.0 1.85 0.0 0.79

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;