Base-pair statistics (frequencies and scores together) (view)
- predominant_types
- Base-pair types shown in bold in the published table (most frequent).
- covarying_types
- Base-pair types marked * in the published table (involved in a covariation).
- sequences
- Number of sequences in the group.
1 row where conformation = "tHS/tSH" and group_code = 3 sorted by position_1
This data as json, CSV (advanced)
tertiary_type 1
strength 1
- Strong 1
molecule 1
- 23S 1
group_code 1
- 3 · 1 ✖
conformation 1
- tHS/tSH · 1 ✖
| molecule | helix_number | position_1 ▼ | position_2 | reference_base_pair | conformation | tertiary_type | strength | group_code | GC | CG | UA | AU | GU | UG | AA | AC | AG | CA | CC | CU | GA | GG | UC | UU | gap | sequences | predominant_types | covarying_types | Xch | Ych | PE | PES | Cov1 | Cov3 | C1_C3 | WC | WCGU | XCons | YCons | DfDel | PNuc |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23S | 68 | 1858 | 1884 | A:G | tHS/tSH | 3°: base pair | Strong | 3 | 0.4 | 0.7 | 20.4 | 35.3 | 43.2 | 456 | AG,GA | AG,GA | 4 | 5 | 3 | 0.67 | 0.95 | 0.98 | 1.93 | 0.01 | 0.01 | -0.42 | -0.39 | 0.0 | 0.41 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
f.predominant_types, f.covarying_types,
s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
on s.molecule = f.molecule and s.position_1 = f.position_1
and s.position_2 = f.position_2 and s.group_code = f.group_code;