Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

4 rows where conformation = "cWW", molecule = "5S" and strength = "Significant" sorted by position_1

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Suggested facets: GC, predominant_types, covarying_types

group_code 4

strength 1

  • Significant · 4 ✖

molecule 1

conformation 1

tertiary_type 0

molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
5S 3 80 96 U:G cWW   Significant 3 0.3 8.5 0.2   0.2 89.2           0.2   0.2 0.2 1.1   611 CG,UG GC,UG,CU                          
5S 3 80 96 U:G cWW   Significant B 0.3 3.6 0.3     94.7               0.7   0.3   302 CG,UG GC,UG                          
5S 3 80 96 U:G cWW   Significant A           100.0                       44 UG                            
5S 3 80 96 U:G cWW   Significant E 0.7 14.8     0.3 80.9           0.3     0.3 2.7   298 CG,UG,UU GC,UG,CU                          

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;