Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

49 rows where conformation = "cWW", molecule = "23S" and strength = "No Support" sorted by position_1

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Suggested facets: helix_number, position_1, position_2, reference_base_pair, GC, CG, UA, GU, UG, AA, AC, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel

group_code 7

tertiary_type 1

strength 1

  • No Support · 49 ✖

molecule 1

  • 23S · 49 ✖

conformation 1

  • cWW · 49 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
23S 25.1 566 575 U:A cWW   No Support T     98.6     0.1                     1.2 887 UA   0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 1.88 1.87 0.0 0.84
23S 25.1 566 575 U:A cWW   No Support 3     99.8     0.2                       525 UA   0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.98 0.0 0.83
23S 25.1 566 575 U:A cWW   No Support B     100.0                             281 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.86
23S 25.1 566 575 U:A cWW   No Support A     100.0                             37 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
23S 25.1 566 575 U:A cWW   No Support C     100.0                             100 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97
23S 25.1 566 575 U:A cWW   No Support E     99.5     0.5                       207 UA   0 1 0 0.0 0.0 0.0 0.0 0.99 1.0 2.0 1.96 0.0 0.79
23S 25.1 566 575 U:A cWW   No Support M     95.8                           4.2 262 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.67 1.67 0.0 0.8
23S 49.1 1310 1604 G:C cWW   No Support T 72.3           0.1 0.1         0.2       27.1 839 GC GC,AA 10 2 0 0.0 0.25 0.99 1.25 0.99 0.99 0.61 0.57 0.17 0.58
23S 49.1 1310 1604 G:C cWW   No Support 3 99.6             0.2                 0.2 464 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.95 1.97 0.0 0.73
23S 49.1 1310 1604 G:C cWW   No Support B 100.0                                 262 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.8
23S 49.1 1310 1604 G:C cWW   No Support A 100.0                                 41 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 49.1 1310 1604 G:C cWW   No Support C 100.0                                 100 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.97
23S 49.1 1310 1604 G:C cWW   No Support E 98.8             0.6                 0.6 161 GC   0 0 0 0.0 0.0 0.0 0.0 0.99 0.99 1.89 1.93 0.0 0.61
23S 49.1 1310 1604 G:C cWW   No Support M 16.4           0.4           0.7       82.6 275 GC GC,AA 10 2 0 0.0 0.33 0.96 1.29 0.94 0.94 -0.34 -0.42 0.56 0.15
23S 74 2064 2446 C:G cWW   No Support T   99.0 0.6     0.2                     0.1 831 CG CG,UA 1 1 1 1.0 0.71 1.0 1.71 1.0 1.0 1.92 1.93 0.0 0.79
23S 74 2064 2446 C:G cWW   No Support 3   99.3       0.5                     0.2 423 CG   0 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.96 1.97 0.0 0.67
23S 74 2064 2446 C:G cWW   No Support B   98.7       0.8                     0.4 239 CG   0 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.93 1.95 0.0 0.73
23S 74 2064 2446 C:G cWW   No Support A   100.0                               41 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 74 2064 2446 C:G cWW   No Support C   100.0                               99 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96
23S 74 2064 2446 C:G cWW   No Support E   100.0                               143 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.54
23S 74 2064 2446 C:G cWW   No Support M   98.4 1.6                             309 CG CG,UA 1 1 1 1.0 1.0 1.0 2.0 1.0 1.0 1.84 1.88 0.0 0.99
23S 74 2074 2435 U:A cWW   No Support T     99.4       0.1                   0.5 845 UA   1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.95 0.0 0.81
23S 74 2074 2435 U:A cWW   No Support 3     99.1                           0.9 437 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.91 0.01 0.69
23S 74 2074 2435 U:A cWW   No Support B     98.3                           1.7 241 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.84 0.01 0.73
23S 74 2074 2435 U:A cWW   No Support A     100.0                             41 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 74 2074 2435 U:A cWW   No Support C     100.0                             99 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.96
23S 74 2074 2435 U:A cWW   No Support E     100.0                             155 UA   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.59
23S 74 2074 2435 U:A cWW   No Support M     99.7       0.3                     309 UA   1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 2.0 0.0 0.99
23S 90 2508 2580 G:U cWW   No Support T         98.8                     1.2   778 GU   1 0 0 0.0 0.0 0.0 0.0 0.0 0.99 1.91 2.0 0.0 0.74
23S 90 2508 2580 G:U cWW   No Support 3         100.0                         418 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.66
23S 90 2508 2580 G:U cWW   No Support B         100.0                         242 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 1.95 2.0 0.0 0.74
23S 90 2508 2580 G:U cWW   No Support A         100.0                         41 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 1.0
23S 90 2508 2580 G:U cWW   No Support C         100.0                         97 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.94
23S 90 2508 2580 G:U cWW   No Support E         100.0                         135 GU   0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 2.0 2.0 0.0 0.51
23S 90 2508 2580 G:U cWW   No Support M         96.6                     3.4   263 GU,UU   1 0 0 0.0 0.0 0.0 0.0 0.0 0.97 1.81 2.0 0.0 0.84
23S 93 2591 2603 C:G cWW   No Support T   99.5       0.1               0.1     0.2 734 CG   2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.7
23S 93 2591 2603 C:G cWW   No Support 3   99.5                             0.4 417 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.97 1.95 0.0 0.66
23S 93 2591 2603 C:G cWW   No Support B   100.0                               237 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.73
23S 93 2591 2603 C:G cWW   No Support A   100.0                               41 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 1.0
23S 93 2591 2603 C:G cWW   No Support C   100.0                               55 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.53
23S 93 2591 2603 C:G cWW   No Support E   98.6                             1.4 139 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.92 1.92 0.0 0.52
23S 93 2591 2603 C:G cWW   No Support M   99.2       0.4               0.4       262 CG   2 0 0 0.0 0.0 0.0 0.0 0.99 1.0 1.93 2.0 0.0 0.84
23S 101 2845 2871 U:U cWW 3°: base pair No Support T 20.7 2.6 2.6 20.2 17.8 2.8   0.2 5.2 0.5   0.9   1.2   23.2 2.1 426 GC,CG,UA,AU,GU,UG,AG,UU GC,AG,CA,UU 34 30 13 0.41 0.35 0.51 0.86 0.47 0.68 0.09 0.44 0.0 0.4
23S 101 2845 2871 U:U cWW 3°: base pair No Support 3 21.5 3.3   16.0 19.0 3.0     6.6 0.3   0.6   0.3   29.0 0.3 331 GC,CG,AU,GU,UG,AG,UU GC,AG,CA,UU 21 19 10 0.5 0.4 0.58 0.98 0.41 0.63 0.19 0.71 0.01 0.52
23S 101 2845 2871 U:U cWW 3°: base pair No Support B 6.3 3.9   3.4 29.3       10.7     0.5       45.9   205 GC,CG,AU,GU,AG,UU GC,AG,UU 15 12 7 0.52 0.32 0.63 0.94 0.14 0.43 0.36 1.07 0.0 0.63
23S 101 2845 2871 U:U cWW 3°: base pair No Support A 100.0                                 38 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.93
23S 101 2845 2871 U:U cWW 3°: base pair No Support C 30.0   4.0 42.0 16.0 2.0   2.0       4.0           50 GC,UA,AU,GU,UG,AC,CU GC,UA,AU 4 3 0 0.0 0.59 0.76 1.35 0.76 0.94 0.53 0.75 0.0 0.48
23S 101 2845 2871 U:U cWW 3°: base pair No Support E 22.7 3.4   52.3 3.4 11.4       1.1   1.1   1.1   2.3 1.1 88 GC,CG,AU,GU,UG,UU GC,AU,UG,CA 6 7 3 0.46 0.76 0.89 1.64 0.79 0.94 0.32 0.58 0.01 0.33
23S 101 2845 2871 U:U cWW 3°: base pair No Support M 4.4   20.0 26.7 11.1 2.2       2.2       8.9   6.7 17.8 45 GC,UA,AU,GU,UG,CA,GG,UU UA,AU,GG 9 8 3 0.35 0.52 0.68 1.2 0.62 0.78 -0.43 -0.35 0.0 0.12

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CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;