Base-pair statistics (frequencies and scores together) (view)

predominant_types
Base-pair types shown in bold in the published table (most frequent).
covarying_types
Base-pair types marked * in the published table (involved in a covariation).
sequences
Number of sequences in the group.

28 rows where conformation = "cWW", molecule = "16S" and strength = "No Support" sorted by position_1

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: helix_number, position_1, position_2, reference_base_pair, GC, CG, GU, UG, AC, CC, GG, gap, predominant_types, covarying_types, Xch, Ych, PE, PES, Cov1, Cov3, C1_C3, WC, WCGU, XCons, YCons, DfDel, PNuc

group_code 7

tertiary_type 2

strength 1

  • No Support · 28 ✖

molecule 1

  • 16S · 28 ✖

conformation 1

  • cWW · 28 ✖
molecule helix_number position_1 ▼ position_2 reference_base_pair conformation tertiary_type strength group_code GC CG UA AU GU UG AA AC AG CA CC CU GA GG UC UU gap sequences predominant_types covarying_types Xch Ych PE PES Cov1 Cov3 C1_C3 WC WCGU XCons YCons DfDel PNuc
16S 18 521 528 G:C cWW 3°: pseudoknot No Support T 99.5       0.1     0.1           0.1     0.2 6570 GC   3 5 0 0.0 0.04 0.0 0.04 1.0 1.0 1.96 1.96 0.0 0.77
16S 18 521 528 G:C cWW 3°: pseudoknot No Support 3 99.5       0.1     0.1           0.1     0.1 5577 GC   3 4 0 0.0 0.05 0.0 0.05 1.0 1.0 1.97 1.96 0.0 0.78
16S 18 521 528 G:C cWW 3°: pseudoknot No Support B 99.4       0.1     0.1           0.1     0.2 4373 GC   3 3 0 0.0 0.06 0.0 0.06 1.0 1.0 1.96 1.95 0.0 0.74
16S 18 521 528 G:C cWW 3°: pseudoknot No Support A 99.5                         0.5       203 GC   0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.96 0.0 0.77
16S 18 521 528 G:C cWW 3°: pseudoknot No Support C 99.4                   0.6             170 GC   0 1 0 0.0 0.0 0.0 0.0 0.99 0.99 1.95 2.0 0.0 0.93
16S 18 521 528 G:C cWW 3°: pseudoknot No Support E 99.8             0.1                 0.1 1001 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.99 1.99 0.0 0.95
16S 18 521 528 G:C cWW 3°: pseudoknot No Support M 99.6       0.1                 0.1     0.1 831 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.96 0.0 0.72
16S 28 924 1392 C:G cWW   No Support T   99.3       0.1       0.1 0.1 0.1   0.2     0.1 5980 CG   14 9 3 0.26 0.07 0.0 0.07 0.99 1.0 1.94 1.96 0.0 0.7
16S 28 924 1392 C:G cWW   No Support 3   99.6       0.1           0.1         0.1 4928 CG   5 3 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.69
16S 28 924 1392 C:G cWW   No Support B   99.6       0.1           0.1         0.1 3785 CG   4 3 0 0.0 0.0 0.0 0.0 1.0 1.0 1.96 1.97 0.0 0.65
16S 28 924 1392 C:G cWW   No Support A   100.0                               169 CG   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.93 2.0 0.0 0.64
16S 28 924 1392 C:G cWW   No Support C   99.4                 0.6             154 CG   0 2 0 0.0 0.0 0.0 0.0 0.99 0.99 2.0 1.95 0.0 0.85
16S 28 924 1392 C:G cWW   No Support E   99.5             0.1 0.1 0.1           0.2 973 CG   1 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.98 1.96 0.0 0.92
16S 28 924 1392 C:G cWW   No Support M 0.2 98.3     0.1 0.2       0.1       1.0       899 CG GC,CG 9 4 3 0.46 0.13 0.0 0.13 0.99 0.99 1.9 1.95 0.0 0.78
16S 31 963 972 G:C cWW   No Support T 99.4             0.1                 0.4 6866 GC   5 4 1 0.22 0.13 0.0 0.13 1.0 1.0 1.96 1.96 0.0 0.8
16S 31 963 972 G:C cWW   No Support 3 99.5             0.1     0.1           0.3 5549 GC   5 3 0 0.0 0.14 0.0 0.14 1.0 1.0 1.96 1.97 0.0 0.77
16S 31 963 972 G:C cWW   No Support B 99.5             0.1                 0.2 4342 GC   3 3 1 0.33 0.18 0.0 0.18 1.0 1.0 1.96 1.96 0.0 0.74
16S 31 963 972 G:C cWW   No Support A 100.0                                 201 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.76
16S 31 963 972 G:C cWW   No Support C 100.0                                 163 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 2.0 0.0 0.9
16S 31 963 972 G:C cWW   No Support E 99.5             0.2     0.1           0.2 1006 GC   2 0 0 0.0 0.0 0.0 0.0 1.0 1.0 1.94 2.0 0.0 0.95
16S 31 963 972 G:C cWW   No Support M 99.9       0.1                         1153 GC   0 1 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.99 0.0 0.99
16S 34 1061 1195 G:C cWW 3°: base pair No Support T 91.4     6.3 1.9                 0.1     0.2 6774 GC,AU GC,AU 7 21 2 0.14 0.74 0.98 1.72 0.98 1.0 1.64 1.56 0.0 0.79
16S 34 1061 1195 G:C cWW 3°: base pair No Support 3 97.0     0.3 2.3           0.1     0.1     0.1 5466 GC,GU GC,AU 2 16 1 0.11 0.1 0.0 0.1 0.97 1.0 1.95 1.79 0.0 0.76
16S 34 1061 1195 G:C cWW 3°: base pair No Support B 99.4       0.4                 0.1       4267 GC   1 11 0 0.0 0.0 0.0 0.0 0.99 1.0 1.98 1.94 0.0 0.73
16S 34 1061 1195 G:C cWW 3°: base pair No Support A 36.0     7.6 55.8                       0.5 197 GC,AU,GU   1 2 1 0.67 0.0 0.0 0.0 0.44 1.0 1.62 1.01 0.0 0.74
16S 34 1061 1195 G:C cWW 3°: base pair No Support C 100.0                                 162 GC   0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 2.0 1.94 0.01 0.89
16S 34 1061 1195 G:C cWW 3°: base pair No Support E 99.3       0.2           0.2     0.1     0.2 998 GC   0 3 0 0.0 0.0 0.0 0.0 0.99 1.0 1.97 1.96 0.0 0.94
16S 34 1061 1195 G:C cWW 3°: base pair No Support M 63.7     35.5 0.3     0.2           0.1 0.1   0.2 1151 GC,AU GC,AU 5 5 1 0.2 0.98 0.99 1.98 0.99 1.0 1.03 1.04 0.0 0.99

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE VIEW basepair_combined as
select f.molecule, f.helix_number, f.position_1, f.position_2,
       f.reference_base_pair, f.conformation, f.tertiary_type, f.strength, f.group_code,
       f.GC, f.CG, f.UA, f.AU, f.GU, f.UG, f.AA, f.AC, f.AG, f.CA, f.CC, f.CU, f.GA, f.GG, f.UC, f.UU, f.gap, f.Seq as sequences,
       f.predominant_types, f.covarying_types,
       s.Xch, s.Ych, s.PE, s.PES, s.Cov1, s.Cov3, s."C1+C3" as C1_C3,
       s.WC, s.WCGU, s.XCons, s.YCons, s.DfDel, s.PNuc
from basepair_frequency f
left join basepair_collective_score s
  on s.molecule = f.molecule and s.position_1 = f.position_1
 and s.position_2 = f.position_2 and s.group_code = f.group_code;